Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AL162727.3-201ENST00000635661 2787 ntBASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4CQ96CF2 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 SPDYE14P-201ENST00000442619 822 ntBASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 FAM86GP-201ENST00000448322 971 ntBASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 AC005498.2-205ENST00000593218 784 ntBASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 MIR6080-201ENST00000617359 66 ntBASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 AC008267.7-201ENST00000624570 1194 ntBASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4CQ96CF2 AL592424.1-201ENST00000563624 1536 ntBASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 AC092850.2-201ENST00000623821 2697 ntBASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 MIR770-201ENST00000390219 98 ntBASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 MIR4453-201ENST00000584019 89 ntBASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms