Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.05■□□□□ 0.64
BRF1Q92994 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC19.05■□□□□ 0.64
BRF1Q92994 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC19.05■□□□□ 0.64
BRF1Q92994 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BRF1Q92994 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC19.04■□□□□ 0.64
BRF1Q92994 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC19.04■□□□□ 0.64
BRF1Q92994 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
BRF1Q92994 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.04■□□□□ 0.64
BRF1Q92994 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.04■□□□□ 0.64
BRF1Q92994 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
BRF1Q92994 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.04■□□□□ 0.64
BRF1Q92994 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.04■□□□□ 0.64
BRF1Q92994 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.04■□□□□ 0.64
BRF1Q92994 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.04■□□□□ 0.64
BRF1Q92994 RNA5SP410-201ENST00000516285 106 ntBASIC19.04■□□□□ 0.64
BRF1Q92994 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.04■□□□□ 0.64
BRF1Q92994 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.04■□□□□ 0.64
BRF1Q92994 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.04■□□□□ 0.64
BRF1Q92994 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.04■□□□□ 0.64
BRF1Q92994 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 AC134407.2-201ENST00000625089 1978 ntBASIC19.04■□□□□ 0.64
BRF1Q92994 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.04■□□□□ 0.64
BRF1Q92994 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
BRF1Q92994 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
BRF1Q92994 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
BRF1Q92994 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.03■□□□□ 0.64
BRF1Q92994 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
BRF1Q92994 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
BRF1Q92994 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.03■□□□□ 0.64
BRF1Q92994 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
BRF1Q92994 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.03■□□□□ 0.64
BRF1Q92994 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.03■□□□□ 0.64
BRF1Q92994 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.03■□□□□ 0.64
BRF1Q92994 UPF3AP3-201ENST00000420996 769 ntBASIC19.03■□□□□ 0.64
BRF1Q92994 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.03■□□□□ 0.64
BRF1Q92994 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
BRF1Q92994 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.03■□□□□ 0.64
BRF1Q92994 AL513210.1-201ENST00000629608 234 ntBASIC19.03■□□□□ 0.64
BRF1Q92994 AC084121.4-201ENST00000641598 221 ntBASIC19.03■□□□□ 0.64
BRF1Q92994 AF228730.8-201ENST00000642140 221 ntBASIC19.03■□□□□ 0.64
BRF1Q92994 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.03■□□□□ 0.64
BRF1Q92994 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.03■□□□□ 0.64
BRF1Q92994 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
BRF1Q92994 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BRF1Q92994 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
BRF1Q92994 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC19.03■□□□□ 0.64
BRF1Q92994 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.02■□□□□ 0.64
BRF1Q92994 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC19.02■□□□□ 0.64
BRF1Q92994 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.02■□□□□ 0.64
BRF1Q92994 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.02■□□□□ 0.64
BRF1Q92994 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.02■□□□□ 0.64
BRF1Q92994 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.02■□□□□ 0.64
BRF1Q92994 FAM220BP-201ENST00000377689 816 ntBASIC19.02■□□□□ 0.64
BRF1Q92994 AC004461.1-201ENST00000412461 403 ntBASIC19.02■□□□□ 0.64
BRF1Q92994 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.02■□□□□ 0.64
BRF1Q92994 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
BRF1Q92994 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms