Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CEP83-AS1-201ENST00000623122 2482 ntBASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 FAM207CP-201ENST00000443486 507 ntBASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CCDC187-204ENST00000624277 3918 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CNN2P2-201ENST00000443536 909 ntBASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CNN2P3-201ENST00000450201 906 ntBASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AL136317.3-201ENST00000618497 906 ntBASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TP53I11-220ENST00000533940 3703 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 GRAP-202ENST00000395635 834 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AL158211.3-201ENST00000607385 239 ntBASIC5.04□□□□□ -1.6
SYNE1Q8NF91 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RBAK-201ENST00000353796 4125 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AC012569.1-201ENST00000591191 1524 ntBASIC5.04□□□□□ -1.6
SYNE1Q8NF91 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 BNIP3P42-201ENST00000454982 569 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 BNIP3P29-201ENST00000598302 571 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 AC011447.5-201ENST00000616168 564 ntBASIC5.03□□□□□ -1.6
SYNE1Q8NF91 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SYNE1Q8NF91 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms