Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 AC011477.6-201ENST00000604980 1927 ntBASIC10.04□□□□□ -0.8
LINC00643Q86TS7 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 UBE2DNL-204ENST00000602536 740 ntBASIC10.04□□□□□ -0.8
LINC00643Q86TS7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 HOXB1-202ENST00000577092 1414 ntBASIC10.04□□□□□ -0.8
LINC00643Q86TS7 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 AC106818.1-201ENST00000623223 3242 ntBASIC10.04□□□□□ -0.8
LINC00643Q86TS7 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 RNF165-202ENST00000543885 4852 ntTSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC10.04□□□□□ -0.8
LINC00643Q86TS7 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 BEND3P3-201ENST00000611030 2440 ntBASIC10.03□□□□□ -0.8
LINC00643Q86TS7 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 AC152010.1-201ENST00000415779 2006 ntBASIC10.03□□□□□ -0.8
LINC00643Q86TS7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 USP3-204ENST00000540797 5474 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms