Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.9□□□□□ -0.18
ABCA4P78363 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.9□□□□□ -0.18
ABCA4P78363 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA4P78363 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
ABCA4P78363 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
ABCA4P78363 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.9□□□□□ -0.19
ABCA4P78363 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
ABCA4P78363 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
ABCA4P78363 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC13.89□□□□□ -0.19
ABCA4P78363 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.89□□□□□ -0.19
ABCA4P78363 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.89□□□□□ -0.19
ABCA4P78363 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.89□□□□□ -0.19
ABCA4P78363 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.89□□□□□ -0.19
ABCA4P78363 AC104989.1-201ENST00000519711 778 ntBASIC13.89□□□□□ -0.19
ABCA4P78363 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
ABCA4P78363 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 AC133552.6-201ENST00000613406 534 ntBASIC13.89□□□□□ -0.19
ABCA4P78363 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.89□□□□□ -0.19
ABCA4P78363 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.89□□□□□ -0.19
ABCA4P78363 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 U82695.1-201ENST00000635752 1889 ntBASIC13.89□□□□□ -0.19
ABCA4P78363 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
ABCA4P78363 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.89□□□□□ -0.19
ABCA4P78363 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
ABCA4P78363 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.89□□□□□ -0.19
ABCA4P78363 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.89□□□□□ -0.19
ABCA4P78363 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 AC123567.1-201ENST00000548294 1261 ntBASIC13.89□□□□□ -0.19
ABCA4P78363 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
ABCA4P78363 AL512343.1-201ENST00000605837 169 ntBASIC13.89□□□□□ -0.19
ABCA4P78363 AL365330.1-201ENST00000607459 531 ntBASIC13.89□□□□□ -0.19
ABCA4P78363 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
ABCA4P78363 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 AC060834.1-201ENST00000443027 2032 ntBASIC13.89□□□□□ -0.19
ABCA4P78363 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
ABCA4P78363 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
ABCA4P78363 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
ABCA4P78363 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 AC092933.1-201ENST00000393644 945 ntBASIC13.88□□□□□ -0.19
ABCA4P78363 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC13.88□□□□□ -0.19
ABCA4P78363 AL139010.1-201ENST00000454878 894 ntBASIC13.88□□□□□ -0.19
ABCA4P78363 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.88□□□□□ -0.19
ABCA4P78363 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC13.88□□□□□ -0.19
ABCA4P78363 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.88□□□□□ -0.19
ABCA4P78363 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
ABCA4P78363 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.88□□□□□ -0.19
ABCA4P78363 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC13.88□□□□□ -0.19
ABCA4P78363 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
ABCA4P78363 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ABCA4P78363 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
ABCA4P78363 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC13.88□□□□□ -0.19
ABCA4P78363 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
ABCA4P78363 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms