Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
HOXA1P49639 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
HOXA1P49639 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HOXA1P49639 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.54□□□□□ -0.24
HOXA1P49639 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HOXA1P49639 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.53□□□□□ -0.24
HOXA1P49639 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 HNRNPRP1-201ENST00000453465 1695 ntBASIC13.53□□□□□ -0.24
HOXA1P49639 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.53□□□□□ -0.24
HOXA1P49639 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.53□□□□□ -0.24
HOXA1P49639 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
HOXA1P49639 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
HOXA1P49639 RCN1P2-201ENST00000398357 915 ntBASIC13.53□□□□□ -0.24
HOXA1P49639 LINC00982-205ENST00000420957 435 ntBASIC13.53□□□□□ -0.24
HOXA1P49639 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HOXA1P49639 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 CIB2-208ENST00000560618 804 ntTSL 2 BASIC13.53□□□□□ -0.24
HOXA1P49639 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC13.53□□□□□ -0.24
HOXA1P49639 BNIP3P18-201ENST00000593976 575 ntBASIC13.53□□□□□ -0.24
HOXA1P49639 COPE-211ENST00000600932 1144 ntTSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC13.53□□□□□ -0.24
HOXA1P49639 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 KRT8P49-201ENST00000604166 1432 ntBASIC13.53□□□□□ -0.24
HOXA1P49639 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC13.53□□□□□ -0.24
HOXA1P49639 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC13.53□□□□□ -0.24
HOXA1P49639 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HOXA1P49639 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
HOXA1P49639 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HOXA1P49639 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HOXA1P49639 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HOXA1P49639 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.52□□□□□ -0.24
HOXA1P49639 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.24
HOXA1P49639 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HOXA1P49639 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.52□□□□□ -0.24
HOXA1P49639 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.52□□□□□ -0.24
HOXA1P49639 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HOXA1P49639 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.52□□□□□ -0.24
HOXA1P49639 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
HOXA1P49639 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HOXA1P49639 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.52□□□□□ -0.24
HOXA1P49639 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC13.52□□□□□ -0.25
HOXA1P49639 GUK1-204ENST00000366721 689 ntTSL 3 BASIC13.52□□□□□ -0.25
HOXA1P49639 PPIH-202ENST00000372549 327 ntTSL 3 BASIC13.52□□□□□ -0.25
HOXA1P49639 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.52□□□□□ -0.25
HOXA1P49639 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC13.52□□□□□ -0.25
HOXA1P49639 AC074051.2-201ENST00000565115 352 ntBASIC13.52□□□□□ -0.25
HOXA1P49639 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC13.52□□□□□ -0.25
HOXA1P49639 AP002414.4-201ENST00000589764 1148 ntBASIC13.52□□□□□ -0.25
HOXA1P49639 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HOXA1P49639 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.52□□□□□ -0.25
HOXA1P49639 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
HOXA1P49639 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.52□□□□□ -0.25
HOXA1P49639 PC-204ENST00000524491 1714 ntTSL 2 BASIC13.52□□□□□ -0.25
HOXA1P49639 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC13.52□□□□□ -0.25
HOXA1P49639 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.52□□□□□ -0.25
HOXA1P49639 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HOXA1P49639 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
HOXA1P49639 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.52□□□□□ -0.25
HOXA1P49639 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms