Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
COL18A1P39060 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC20.86■□□□□ 0.93
COL18A1P39060 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL18A1P39060 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC20.86■□□□□ 0.93
COL18A1P39060 ECM1P1-201ENST00000604092 1279 ntBASIC20.86■□□□□ 0.93
COL18A1P39060 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
COL18A1P39060 AC006453.4-201ENST00000636949 1252 ntBASIC20.86■□□□□ 0.93
COL18A1P39060 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL18A1P39060 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL18A1P39060 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL18A1P39060 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL18A1P39060 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.86■□□□□ 0.93
COL18A1P39060 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
COL18A1P39060 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL18A1P39060 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
COL18A1P39060 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COL18A1P39060 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL18A1P39060 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL18A1P39060 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC20.85■□□□□ 0.93
COL18A1P39060 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
COL18A1P39060 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 AC004898.1-201ENST00000451057 766 ntBASIC20.85■□□□□ 0.93
COL18A1P39060 HOMER2P2-201ENST00000451621 847 ntBASIC20.85■□□□□ 0.93
COL18A1P39060 APOA2-204ENST00000464492 530 ntTSL 3 BASIC20.85■□□□□ 0.93
COL18A1P39060 CYGB-203ENST00000589145 788 ntTSL 3 BASIC20.85■□□□□ 0.93
COL18A1P39060 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL18A1P39060 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC20.85■□□□□ 0.93
COL18A1P39060 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL18A1P39060 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL18A1P39060 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL18A1P39060 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
COL18A1P39060 BTBD6P1-201ENST00000412176 1267 ntBASIC20.85■□□□□ 0.93
COL18A1P39060 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL18A1P39060 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC20.85■□□□□ 0.93
COL18A1P39060 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 AC018892.3-201ENST00000623986 2499 ntBASIC20.84■□□□□ 0.93
COL18A1P39060 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
COL18A1P39060 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC20.84■□□□□ 0.93
COL18A1P39060 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 POLL-217ENST00000628479 1953 ntTSL 5 BASIC20.84■□□□□ 0.93
COL18A1P39060 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC20.84■□□□□ 0.93
COL18A1P39060 RPS3-201ENST00000278572 907 ntTSL 3 BASIC20.84■□□□□ 0.93
COL18A1P39060 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC20.84■□□□□ 0.93
COL18A1P39060 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC20.84■□□□□ 0.93
COL18A1P39060 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC20.84■□□□□ 0.93
COL18A1P39060 AC138028.6-201ENST00000616106 1482 ntBASIC20.84■□□□□ 0.93
COL18A1P39060 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.84■□□□□ 0.93
COL18A1P39060 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL18A1P39060 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC20.84■□□□□ 0.93
COL18A1P39060 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
COL18A1P39060 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL18A1P39060 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL18A1P39060 SLC25A24P2-201ENST00000415059 510 ntBASIC20.83■□□□□ 0.93
COL18A1P39060 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL18A1P39060 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.83■□□□□ 0.93
COL18A1P39060 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC20.83■□□□□ 0.93
COL18A1P39060 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL18A1P39060 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL18A1P39060 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.92
COL18A1P39060 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL18A1P39060 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL18A1P39060 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL18A1P39060 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL18A1P39060 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
COL18A1P39060 KRT8P35-201ENST00000483942 1338 ntBASIC20.83■□□□□ 0.92
COL18A1P39060 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL18A1P39060 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.82■□□□□ 0.92
COL18A1P39060 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
COL18A1P39060 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 RAC2-202ENST00000401529 569 ntTSL 4 BASIC20.82■□□□□ 0.92
COL18A1P39060 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC20.82■□□□□ 0.92
COL18A1P39060 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
COL18A1P39060 KRT18P25-201ENST00000508931 1278 ntBASIC20.82■□□□□ 0.92
COL18A1P39060 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC20.82■□□□□ 0.92
COL18A1P39060 AP005019.2-201ENST00000615104 511 ntBASIC20.82■□□□□ 0.92
COL18A1P39060 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms