Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC18.7■□□□□ 0.58
SCN4AP35499 MSRA-203ENST00000441698 788 ntTSL 2 BASIC18.7■□□□□ 0.58
SCN4AP35499 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SCN4AP35499 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SCN4AP35499 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
SCN4AP35499 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.7■□□□□ 0.58
SCN4AP35499 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.7■□□□□ 0.58
SCN4AP35499 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SCN4AP35499 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
SCN4AP35499 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SCN4AP35499 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.69■□□□□ 0.58
SCN4AP35499 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SCN4AP35499 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SCN4AP35499 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SCN4AP35499 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.69■□□□□ 0.58
SCN4AP35499 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SCN4AP35499 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.69■□□□□ 0.58
SCN4AP35499 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
SCN4AP35499 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SCN4AP35499 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC18.69■□□□□ 0.58
SCN4AP35499 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SCN4AP35499 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC18.69■□□□□ 0.58
SCN4AP35499 AC234782.1-201ENST00000451950 919 ntBASIC18.69■□□□□ 0.58
SCN4AP35499 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.69■□□□□ 0.58
SCN4AP35499 GAPDHP40-201ENST00000505218 1006 ntBASIC18.69■□□□□ 0.58
SCN4AP35499 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC18.69■□□□□ 0.58
SCN4AP35499 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SCN4AP35499 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.69■□□□□ 0.58
SCN4AP35499 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.69■□□□□ 0.58
SCN4AP35499 AC097359.3-201ENST00000603982 1210 ntBASIC18.69■□□□□ 0.58
SCN4AP35499 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC18.69■□□□□ 0.58
SCN4AP35499 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SCN4AP35499 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.69■□□□□ 0.58
SCN4AP35499 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SCN4AP35499 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN4AP35499 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.68■□□□□ 0.58
SCN4AP35499 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN4AP35499 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN4AP35499 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.68■□□□□ 0.58
SCN4AP35499 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN4AP35499 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN4AP35499 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN4AP35499 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN4AP35499 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.68■□□□□ 0.58
SCN4AP35499 AP001282.1-201ENST00000531301 1499 ntBASIC18.68■□□□□ 0.58
SCN4AP35499 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN4AP35499 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN4AP35499 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN4AP35499 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN4AP35499 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN4AP35499 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN4AP35499 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.67■□□□□ 0.58
SCN4AP35499 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 POU5F1P6-201ENST00000466990 990 ntBASIC18.67■□□□□ 0.58
SCN4AP35499 NCK2-206ENST00000522586 490 ntTSL 5 BASIC18.67■□□□□ 0.58
SCN4AP35499 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.67■□□□□ 0.58
SCN4AP35499 AC073413.1-201ENST00000603927 732 ntBASIC18.67■□□□□ 0.58
SCN4AP35499 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
SCN4AP35499 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.67■□□□□ 0.58
SCN4AP35499 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.67■□□□□ 0.58
SCN4AP35499 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SCN4AP35499 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN4AP35499 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN4AP35499 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN4AP35499 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN4AP35499 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN4AP35499 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SCN4AP35499 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SCN4AP35499 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
SCN4AP35499 AC024681.1-201ENST00000521917 487 ntBASIC18.67■□□□□ 0.58
SCN4AP35499 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 RNF41-210ENST00000552244 716 ntTSL 3 BASIC18.67■□□□□ 0.58
SCN4AP35499 AC244157.2-201ENST00000616239 1006 ntBASIC18.67■□□□□ 0.58
SCN4AP35499 HLA-C-210ENST00000640219 976 ntBASIC18.67■□□□□ 0.58
SCN4AP35499 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN4AP35499 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN4AP35499 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.66■□□□□ 0.58
SCN4AP35499 AC134043.2-201ENST00000624206 2238 ntBASIC18.66■□□□□ 0.58
SCN4AP35499 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.66■□□□□ 0.58
SCN4AP35499 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.66■□□□□ 0.58
SCN4AP35499 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 SNX21-203ENST00000372541 771 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms