Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC19.02■□□□□ 0.64
COL4A5P29400 AL451050.2-201ENST00000606967 682 ntBASIC19.02■□□□□ 0.64
COL4A5P29400 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A5P29400 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.02■□□□□ 0.64
COL4A5P29400 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
COL4A5P29400 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A5P29400 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A5P29400 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A5P29400 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC19.02■□□□□ 0.63
COL4A5P29400 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL4A5P29400 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL4A5P29400 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
COL4A5P29400 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.02■□□□□ 0.63
COL4A5P29400 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A5P29400 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A5P29400 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A5P29400 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A5P29400 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A5P29400 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A5P29400 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
COL4A5P29400 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL4A5P29400 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
COL4A5P29400 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL4A5P29400 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A5P29400 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A5P29400 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A5P29400 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A5P29400 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A5P29400 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL4A5P29400 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A5P29400 FNTAP2-201ENST00000430308 634 ntBASIC19.01■□□□□ 0.63
COL4A5P29400 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A5P29400 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A5P29400 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A5P29400 MIR4706-201ENST00000582134 82 ntBASIC19.01■□□□□ 0.63
COL4A5P29400 AC097724.1-201ENST00000609581 426 ntBASIC19.01■□□□□ 0.63
COL4A5P29400 AC018892.3-201ENST00000623986 2499 ntBASIC19.01■□□□□ 0.63
COL4A5P29400 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A5P29400 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19■□□□□ 0.63
COL4A5P29400 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19■□□□□ 0.63
COL4A5P29400 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL4A5P29400 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
COL4A5P29400 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19■□□□□ 0.63
COL4A5P29400 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC19■□□□□ 0.63
COL4A5P29400 DEF8-202ENST00000418391 852 ntTSL 2 BASIC19■□□□□ 0.63
COL4A5P29400 HINT2P1-201ENST00000419438 481 ntBASIC19■□□□□ 0.63
COL4A5P29400 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19■□□□□ 0.63
COL4A5P29400 IMP3P2-201ENST00000489760 475 ntBASIC19■□□□□ 0.63
COL4A5P29400 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19■□□□□ 0.63
COL4A5P29400 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19■□□□□ 0.63
COL4A5P29400 AC104982.3-201ENST00000581995 514 ntBASIC19■□□□□ 0.63
COL4A5P29400 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC19■□□□□ 0.63
COL4A5P29400 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19■□□□□ 0.63
COL4A5P29400 AC138627.1-207ENST00000641560 1006 ntBASIC19■□□□□ 0.63
COL4A5P29400 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A5P29400 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A5P29400 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A5P29400 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.99■□□□□ 0.63
COL4A5P29400 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC18.99■□□□□ 0.63
COL4A5P29400 UPF3AP2-201ENST00000457924 1132 ntBASIC18.99■□□□□ 0.63
COL4A5P29400 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC18.99■□□□□ 0.63
COL4A5P29400 MIR3619-201ENST00000579667 83 ntBASIC18.99■□□□□ 0.63
COL4A5P29400 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A5P29400 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
COL4A5P29400 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.99■□□□□ 0.63
COL4A5P29400 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC18.99■□□□□ 0.63
COL4A5P29400 AC006453.4-201ENST00000636949 1252 ntBASIC18.99■□□□□ 0.63
COL4A5P29400 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A5P29400 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
COL4A5P29400 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
COL4A5P29400 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.99■□□□□ 0.63
COL4A5P29400 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A5P29400 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.99■□□□□ 0.63
COL4A5P29400 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms