Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
XRCC1P18887 AL603832.2-201ENST00000566195 2125 ntBASIC16.18■□□□□ 0.18
XRCC1P18887 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.18■□□□□ 0.18
XRCC1P18887 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
XRCC1P18887 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.18■□□□□ 0.18
XRCC1P18887 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.18■□□□□ 0.18
XRCC1P18887 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.18■□□□□ 0.18
XRCC1P18887 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.18■□□□□ 0.18
XRCC1P18887 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.18■□□□□ 0.18
XRCC1P18887 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 KRT18P34-201ENST00000488218 1270 ntBASIC16.18■□□□□ 0.18
XRCC1P18887 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.18■□□□□ 0.18
XRCC1P18887 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.18■□□□□ 0.18
XRCC1P18887 AC025678.2-201ENST00000562061 970 ntBASIC16.18■□□□□ 0.18
XRCC1P18887 AC004449.1-201ENST00000564240 433 ntBASIC16.18■□□□□ 0.18
XRCC1P18887 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.18■□□□□ 0.18
XRCC1P18887 LINC00628-201ENST00000628516 1289 ntBASIC16.18■□□□□ 0.18
XRCC1P18887 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.18■□□□□ 0.18
XRCC1P18887 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.18■□□□□ 0.18
XRCC1P18887 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 AL596087.1-201ENST00000400979 1969 ntBASIC16.18■□□□□ 0.18
XRCC1P18887 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
XRCC1P18887 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
XRCC1P18887 AL671710.1-201ENST00000610245 2349 ntBASIC16.18■□□□□ 0.18
XRCC1P18887 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
XRCC1P18887 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
XRCC1P18887 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.18■□□□□ 0.18
XRCC1P18887 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
XRCC1P18887 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.17■□□□□ 0.18
XRCC1P18887 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
XRCC1P18887 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.17■□□□□ 0.18
XRCC1P18887 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
XRCC1P18887 MIR346-201ENST00000362234 95 ntBASIC16.17■□□□□ 0.18
XRCC1P18887 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.17■□□□□ 0.18
XRCC1P18887 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 KRT18P32-201ENST00000424695 1287 ntBASIC16.17■□□□□ 0.18
XRCC1P18887 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.17■□□□□ 0.18
XRCC1P18887 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.17■□□□□ 0.18
XRCC1P18887 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.17■□□□□ 0.18
XRCC1P18887 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
XRCC1P18887 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.17■□□□□ 0.18
XRCC1P18887 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.17■□□□□ 0.18
XRCC1P18887 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.17■□□□□ 0.18
XRCC1P18887 AC027307.2-201ENST00000591252 911 ntBASIC16.17■□□□□ 0.18
XRCC1P18887 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.17■□□□□ 0.18
XRCC1P18887 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.17■□□□□ 0.18
XRCC1P18887 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.17■□□□□ 0.18
XRCC1P18887 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
XRCC1P18887 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
XRCC1P18887 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.17■□□□□ 0.18
XRCC1P18887 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
XRCC1P18887 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.16■□□□□ 0.18
XRCC1P18887 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.16■□□□□ 0.18
XRCC1P18887 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
XRCC1P18887 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
XRCC1P18887 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
XRCC1P18887 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
XRCC1P18887 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
XRCC1P18887 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.16■□□□□ 0.18
XRCC1P18887 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
XRCC1P18887 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms