Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
RAPGEF3O95398 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RAPGEF3O95398 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC23.77■■□□□ 1.4
RAPGEF3O95398 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC23.77■■□□□ 1.4
RAPGEF3O95398 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 NF2-208ENST00000403435 2568 ntTSL 5 BASIC23.77■■□□□ 1.4
RAPGEF3O95398 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 KRT18P25-201ENST00000508931 1278 ntBASIC23.77■■□□□ 1.4
RAPGEF3O95398 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC23.77■■□□□ 1.4
RAPGEF3O95398 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC23.77■■□□□ 1.4
RAPGEF3O95398 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC23.77■■□□□ 1.4
RAPGEF3O95398 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC23.77■■□□□ 1.4
RAPGEF3O95398 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC23.77■■□□□ 1.4
RAPGEF3O95398 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RAPGEF3O95398 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 SNX21-203ENST00000372541 771 ntTSL 2 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 HNRNPA1P63-201ENST00000427917 963 ntBASIC23.76■■□□□ 1.39
RAPGEF3O95398 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 AC114501.1-201ENST00000445949 172 ntBASIC23.76■■□□□ 1.39
RAPGEF3O95398 PHKG1P2-201ENST00000457537 863 ntBASIC23.76■■□□□ 1.39
RAPGEF3O95398 ATP6V0CP2-201ENST00000469409 207 ntBASIC23.76■■□□□ 1.39
RAPGEF3O95398 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 CFL1-214ENST00000534769 758 ntTSL 2 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 RNF41-210ENST00000552244 716 ntTSL 3 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 MIR3147-201ENST00000577811 66 ntBASIC23.76■■□□□ 1.39
RAPGEF3O95398 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 AC006480.2-201ENST00000609770 1337 ntBASIC23.76■■□□□ 1.39
RAPGEF3O95398 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RAPGEF3O95398 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
RAPGEF3O95398 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RAPGEF3O95398 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
RAPGEF3O95398 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RAPGEF3O95398 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RAPGEF3O95398 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RAPGEF3O95398 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 AC245100.5-201ENST00000452108 331 ntBASIC23.75■■□□□ 1.39
RAPGEF3O95398 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 IQSEC3P1-201ENST00000538799 536 ntBASIC23.75■■□□□ 1.39
RAPGEF3O95398 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 RN7SL774P-201ENST00000577467 290 ntBASIC23.75■■□□□ 1.39
RAPGEF3O95398 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RAPGEF3O95398 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RAPGEF3O95398 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 AP000346.4-201ENST00000614827 381 ntBASIC23.75■■□□□ 1.39
RAPGEF3O95398 TUBBP5-203ENST00000508529 1334 ntBASIC23.75■■□□□ 1.39
RAPGEF3O95398 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RAPGEF3O95398 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RAPGEF3O95398 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC23.75■■□□□ 1.39
RAPGEF3O95398 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC23.74■■□□□ 1.39
RAPGEF3O95398 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RAPGEF3O95398 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RAPGEF3O95398 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
RAPGEF3O95398 UFM1-202ENST00000379649 846 ntTSL 4 BASIC23.74■■□□□ 1.39
RAPGEF3O95398 TISP43-201ENST00000409793 538 ntTSL 4 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms