Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.93■□□□□ 0.14
VPS4BO75351 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS4BO75351 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 ELK2BP-201ENST00000415014 1224 ntBASIC15.93■□□□□ 0.14
VPS4BO75351 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.93■□□□□ 0.14
VPS4BO75351 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS4BO75351 PRSS29P-201ENST00000440800 595 ntBASIC15.93■□□□□ 0.14
VPS4BO75351 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS4BO75351 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
VPS4BO75351 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS4BO75351 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.93■□□□□ 0.14
VPS4BO75351 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.93■□□□□ 0.14
VPS4BO75351 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
VPS4BO75351 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.93■□□□□ 0.14
VPS4BO75351 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
VPS4BO75351 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
VPS4BO75351 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS4BO75351 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS4BO75351 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS4BO75351 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS4BO75351 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
VPS4BO75351 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS4BO75351 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS4BO75351 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS4BO75351 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS4BO75351 AC011270.2-201ENST00000624293 2550 ntBASIC15.92■□□□□ 0.14
VPS4BO75351 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS4BO75351 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS4BO75351 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS4BO75351 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS4BO75351 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.92■□□□□ 0.14
VPS4BO75351 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS4BO75351 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS4BO75351 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS4BO75351 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.92■□□□□ 0.14
VPS4BO75351 AP000344.2-201ENST00000512987 629 ntBASIC15.92■□□□□ 0.14
VPS4BO75351 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.92■□□□□ 0.14
VPS4BO75351 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.92■□□□□ 0.14
VPS4BO75351 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS4BO75351 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS4BO75351 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS4BO75351 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS4BO75351 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS4BO75351 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VPS4BO75351 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
VPS4BO75351 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 AC005622.1-201ENST00000636801 1703 ntBASIC15.91■□□□□ 0.14
VPS4BO75351 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
VPS4BO75351 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS4BO75351 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
VPS4BO75351 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
VPS4BO75351 BCRP1-201ENST00000444246 691 ntBASIC15.91■□□□□ 0.14
VPS4BO75351 ACTG1P14-201ENST00000446382 1122 ntBASIC15.91■□□□□ 0.14
VPS4BO75351 AC108073.2-201ENST00000464002 357 ntBASIC15.91■□□□□ 0.14
VPS4BO75351 RPS15P9-201ENST00000494093 319 ntBASIC15.91■□□□□ 0.14
VPS4BO75351 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.91■□□□□ 0.14
VPS4BO75351 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.91■□□□□ 0.14
VPS4BO75351 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS4BO75351 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS4BO75351 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms