Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.51■□□□□ 0.07
PDLIM1O00151 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.51■□□□□ 0.07
PDLIM1O00151 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.51■□□□□ 0.07
PDLIM1O00151 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PDLIM1O00151 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 PMPCAP1-201ENST00000508114 1576 ntBASIC15.51■□□□□ 0.07
PDLIM1O00151 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
PDLIM1O00151 AP002414.1-201ENST00000391405 1147 ntBASIC15.51■□□□□ 0.07
PDLIM1O00151 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.51■□□□□ 0.07
PDLIM1O00151 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
PDLIM1O00151 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.51■□□□□ 0.07
PDLIM1O00151 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.51■□□□□ 0.07
PDLIM1O00151 AL121894.2-201ENST00000602977 491 ntBASIC15.51■□□□□ 0.07
PDLIM1O00151 AC073592.5-201ENST00000624854 528 ntBASIC15.51■□□□□ 0.07
PDLIM1O00151 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 AC136621.1-201ENST00000624017 2304 ntBASIC15.51■□□□□ 0.07
PDLIM1O00151 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
PDLIM1O00151 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.51■□□□□ 0.07
PDLIM1O00151 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC15.51■□□□□ 0.07
PDLIM1O00151 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDLIM1O00151 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
PDLIM1O00151 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PDLIM1O00151 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PDLIM1O00151 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PDLIM1O00151 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PDLIM1O00151 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.5■□□□□ 0.07
PDLIM1O00151 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 SSR4P1-203ENST00000599569 2260 ntBASIC15.5■□□□□ 0.07
PDLIM1O00151 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.5■□□□□ 0.07
PDLIM1O00151 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.5■□□□□ 0.07
PDLIM1O00151 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.5■□□□□ 0.07
PDLIM1O00151 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.5■□□□□ 0.07
PDLIM1O00151 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
PDLIM1O00151 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.5■□□□□ 0.07
PDLIM1O00151 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PDLIM1O00151 AC104692.2-201ENST00000603054 253 ntBASIC15.5■□□□□ 0.07
PDLIM1O00151 AL121912.1-201ENST00000603683 238 ntBASIC15.5■□□□□ 0.07
PDLIM1O00151 AL355877.3-201ENST00000622820 899 ntBASIC15.5■□□□□ 0.07
PDLIM1O00151 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.5■□□□□ 0.07
PDLIM1O00151 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
PDLIM1O00151 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 AC079781.5-202ENST00000641784 3743 ntBASIC15.5■□□□□ 0.07
PDLIM1O00151 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PDLIM1O00151 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.5■□□□□ 0.07
PDLIM1O00151 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.5■□□□□ 0.07
PDLIM1O00151 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.5■□□□□ 0.07
PDLIM1O00151 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PDLIM1O00151 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDLIM1O00151 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.49■□□□□ 0.07
PDLIM1O00151 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PDLIM1O00151 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
PDLIM1O00151 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PDLIM1O00151 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms