Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.51■□□□□ 0.07
PCDHGA1Q9Y5H4 KRT8P22-201ENST00000562317 1415 ntBASIC15.51■□□□□ 0.07
PCDHGA1Q9Y5H4 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDHGA1Q9Y5H4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PCDHGA1Q9Y5H4 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 AC084018.2-201ENST00000613093 2607 ntBASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 ACTG1P3-201ENST00000431775 1114 ntBASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 HIST3H2BA-201ENST00000436555 524 ntBASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 MIR4538-201ENST00000581377 78 ntBASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 AC133539.2-201ENST00000604757 467 ntBASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 AL022328.1-201ENST00000610050 478 ntBASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 MIR6787-201ENST00000616675 61 ntBASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 MIR6869-201ENST00000619434 62 ntBASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PCDHGA1Q9Y5H4 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 PCDHB17P-201ENST00000539533 2393 ntBASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 AC092053.1-201ENST00000605787 1936 ntBASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 RNA5SP412-201ENST00000516234 123 ntBASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 RN7SL219P-201ENST00000582872 296 ntBASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 CYP4F24P-201ENST00000586049 1580 ntBASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 KRT8P44-201ENST00000441609 1350 ntBASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDHGA1Q9Y5H4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDHGA1Q9Y5H4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms