Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 KRT17P6-201ENST00000453795 1220 ntBASIC13.97□□□□□ -0.17
CMTM3Q96MX0 BX276092.5-203ENST00000456199 560 ntBASIC13.97□□□□□ -0.17
CMTM3Q96MX0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 AL136038.3-201ENST00000561909 1096 ntBASIC13.97□□□□□ -0.17
CMTM3Q96MX0 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 AL365330.1-201ENST00000607459 531 ntBASIC13.97□□□□□ -0.17
CMTM3Q96MX0 NDUFV2-AS1-203ENST00000608008 779 ntBASIC13.97□□□□□ -0.17
CMTM3Q96MX0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.97□□□□□ -0.17
CMTM3Q96MX0 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 NSUN5P1-202ENST00000421140 1535 ntBASIC13.96□□□□□ -0.17
CMTM3Q96MX0 NSUN5P2-203ENST00000457352 1529 ntBASIC13.96□□□□□ -0.17
CMTM3Q96MX0 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 AP001282.1-201ENST00000531301 1499 ntBASIC13.96□□□□□ -0.17
CMTM3Q96MX0 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 IGHV3-47-201ENST00000425060 335 ntBASIC13.96□□□□□ -0.17
CMTM3Q96MX0 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 SLC25A6P2-201ENST00000497974 877 ntBASIC13.96□□□□□ -0.17
CMTM3Q96MX0 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CMTM3Q96MX0 WASH6P-202ENST00000359512 1437 ntBASIC13.96□□□□□ -0.18
CMTM3Q96MX0 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
CMTM3Q96MX0 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.18
CMTM3Q96MX0 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.96□□□□□ -0.18
CMTM3Q96MX0 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.96□□□□□ -0.18
CMTM3Q96MX0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.96□□□□□ -0.18
CMTM3Q96MX0 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms