Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AC008894.3-201ENST00000624324 3103 ntBASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 DGCR5-201ENST00000399539 862 ntBASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AC245100.3-201ENST00000441281 285 ntBASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 INE1-201ENST00000456273 945 ntBASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AL606495.2-201ENST00000605867 535 ntBASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AC007967.4-201ENST00000614700 386 ntBASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 AL592424.1-201ENST00000563624 1536 ntBASIC18.49■□□□□ 0.55
SH3RF1Q7Z6J0 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 AC079776.1-201ENST00000401540 1152 ntBASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 MIR1909-201ENST00000411312 80 ntBASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 RPS2P32-201ENST00000439199 892 ntBASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 HLA-V-204ENST00000476601 1289 ntBASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 AC140912.1-201ENST00000577171 1054 ntBASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 AC005622.1-201ENST00000636801 1703 ntBASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SH3RF1Q7Z6J0 AC010491.1-201ENST00000563101 2797 ntBASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.47■□□□□ 0.55
SH3RF1Q7Z6J0 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms