Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 CENPM-206ENST00000407253 818 ntTSL 2 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 AC079328.2-201ENST00000561241 3354 ntBASIC19.2■□□□□ 0.66
CTR9Q6PD62 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CTR9Q6PD62 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.2■□□□□ 0.66
CTR9Q6PD62 AL662844.4-201ENST00000606367 2838 ntBASIC19.2■□□□□ 0.66
CTR9Q6PD62 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 AC022144.1-201ENST00000602255 1580 ntBASIC19.19■□□□□ 0.66
CTR9Q6PD62 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 AC236430.1-201ENST00000402231 743 ntBASIC19.19■□□□□ 0.66
CTR9Q6PD62 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 AL512361.1-201ENST00000554200 418 ntBASIC19.19■□□□□ 0.66
CTR9Q6PD62 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 RAB34-223ENST00000636154 730 ntTSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.19■□□□□ 0.66
CTR9Q6PD62 CYP4F24P-201ENST00000586049 1580 ntBASIC19.19■□□□□ 0.66
CTR9Q6PD62 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTR9Q6PD62 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.18■□□□□ 0.66
CTR9Q6PD62 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.18■□□□□ 0.66
CTR9Q6PD62 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CTR9Q6PD62 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.18■□□□□ 0.66
CTR9Q6PD62 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CTR9Q6PD62 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC19.18■□□□□ 0.66
CTR9Q6PD62 AC002472.2-201ENST00000442739 958 ntBASIC19.18■□□□□ 0.66
CTR9Q6PD62 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC19.18■□□□□ 0.66
CTR9Q6PD62 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.18■□□□□ 0.66
CTR9Q6PD62 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CTR9Q6PD62 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC19.18■□□□□ 0.66
CTR9Q6PD62 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms