Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 AL592424.1-201ENST00000563624 1536 ntBASIC19.57■□□□□ 0.72
VPS53Q5VIR6 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 KRT18P32-201ENST00000424695 1287 ntBASIC19.57■□□□□ 0.72
VPS53Q5VIR6 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 AC109322.1-201ENST00000524499 1264 ntBASIC19.57■□□□□ 0.72
VPS53Q5VIR6 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 SPTSSB-204ENST00000617024 1292 ntBASIC19.57■□□□□ 0.72
VPS53Q5VIR6 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS53Q5VIR6 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 U82695.1-201ENST00000635752 1889 ntBASIC19.56■□□□□ 0.72
VPS53Q5VIR6 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 AC046158.3-201ENST00000624947 2558 ntBASIC19.56■□□□□ 0.72
VPS53Q5VIR6 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS53Q5VIR6 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 SPDYE14P-201ENST00000442619 822 ntBASIC19.55■□□□□ 0.72
VPS53Q5VIR6 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 AP3S2-216ENST00000617003 1561 ntBASIC19.55■□□□□ 0.72
VPS53Q5VIR6 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 AL139384.1-201ENST00000612143 3047 ntBASIC19.55■□□□□ 0.72
VPS53Q5VIR6 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 AC008894.3-201ENST00000624324 3103 ntBASIC19.55■□□□□ 0.72
VPS53Q5VIR6 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS53Q5VIR6 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms