Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
MSH6P52701 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
MSH6P52701 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 AC092068.3-201ENST00000587894 2016 ntBASIC22.1■■□□□ 1.13
MSH6P52701 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 AC015818.8-201ENST00000587907 1519 ntBASIC22.1■■□□□ 1.13
MSH6P52701 AL691432.1-201ENST00000596308 1422 ntBASIC22.1■■□□□ 1.13
MSH6P52701 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
MSH6P52701 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC22.1■■□□□ 1.13
MSH6P52701 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
MSH6P52701 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
MSH6P52701 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
MSH6P52701 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
MSH6P52701 TEX30-203ENST00000376022 828 ntTSL 2 BASIC22.1■■□□□ 1.13
MSH6P52701 USP40-206ENST00000443711 628 ntTSL 2 BASIC22.1■■□□□ 1.13
MSH6P52701 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC22.1■■□□□ 1.13
MSH6P52701 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC22.1■■□□□ 1.13
MSH6P52701 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
MSH6P52701 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
MSH6P52701 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
MSH6P52701 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC22.09■■□□□ 1.13
MSH6P52701 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC22.09■■□□□ 1.13
MSH6P52701 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC22.09■■□□□ 1.13
MSH6P52701 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
MSH6P52701 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC22.09■■□□□ 1.13
MSH6P52701 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC22.09■■□□□ 1.13
MSH6P52701 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
MSH6P52701 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC22.09■■□□□ 1.13
MSH6P52701 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC22.09■■□□□ 1.13
MSH6P52701 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC22.09■■□□□ 1.13
MSH6P52701 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC22.09■■□□□ 1.13
MSH6P52701 MIR7845-201ENST00000618396 99 ntBASIC22.09■■□□□ 1.13
MSH6P52701 AC018735.1-201ENST00000437208 1502 ntBASIC22.09■■□□□ 1.13
MSH6P52701 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 AR-207ENST00000612010 3896 ntTSL 5 BASIC22.09■■□□□ 1.13
MSH6P52701 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
MSH6P52701 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC22.09■■□□□ 1.13
MSH6P52701 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH6P52701 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
MSH6P52701 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC22.08■■□□□ 1.13
MSH6P52701 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH6P52701 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
MSH6P52701 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC22.08■■□□□ 1.13
MSH6P52701 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH6P52701 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
MSH6P52701 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH6P52701 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC22.08■■□□□ 1.13
MSH6P52701 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC22.08■■□□□ 1.13
MSH6P52701 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
MSH6P52701 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC22.08■■□□□ 1.13
MSH6P52701 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH6P52701 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
MSH6P52701 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
MSH6P52701 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
MSH6P52701 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC22.08■■□□□ 1.12
MSH6P52701 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
MSH6P52701 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
MSH6P52701 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC22.08■■□□□ 1.12
MSH6P52701 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC22.08■■□□□ 1.12
MSH6P52701 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC22.08■■□□□ 1.12
MSH6P52701 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC22.08■■□□□ 1.12
MSH6P52701 PTPA-218ENST00000435132 618 ntTSL 2 BASIC22.08■■□□□ 1.12
MSH6P52701 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC22.08■■□□□ 1.12
MSH6P52701 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC22.08■■□□□ 1.12
MSH6P52701 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC22.08■■□□□ 1.12
MSH6P52701 IFT20-206ENST00000578122 834 ntTSL 2 BASIC22.08■■□□□ 1.12
MSH6P52701 IFT20-208ENST00000578985 831 ntTSL 3 BASIC22.08■■□□□ 1.12
MSH6P52701 AC097724.1-201ENST00000609581 426 ntBASIC22.08■■□□□ 1.12
MSH6P52701 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
MSH6P52701 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC22.08■■□□□ 1.12
MSH6P52701 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
MSH6P52701 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
MSH6P52701 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC22.08■■□□□ 1.12
MSH6P52701 AC092978.1-202ENST00000637590 1327 ntBASIC22.08■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms