Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LIG3P49916 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LIG3P49916 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LIG3P49916 AL365209.1-201ENST00000624418 6473 ntBASIC17.13■□□□□ 0.33
LIG3P49916 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LIG3P49916 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LIG3P49916 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LIG3P49916 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LIG3P49916 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.13■□□□□ 0.33
LIG3P49916 HCG4B-203ENST00000450128 991 ntBASIC17.13■□□□□ 0.33
LIG3P49916 PAWRP1-201ENST00000451083 565 ntBASIC17.13■□□□□ 0.33
LIG3P49916 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.13■□□□□ 0.33
LIG3P49916 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LIG3P49916 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.13■□□□□ 0.33
LIG3P49916 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.13■□□□□ 0.33
LIG3P49916 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
LIG3P49916 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.13■□□□□ 0.33
LIG3P49916 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LIG3P49916 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LIG3P49916 OR7E47P-204ENST00000575924 449 ntBASIC17.13■□□□□ 0.33
LIG3P49916 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
LIG3P49916 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LIG3P49916 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.13■□□□□ 0.33
LIG3P49916 ALOX12P2-203ENST00000570921 1945 ntBASIC17.13■□□□□ 0.33
LIG3P49916 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LIG3P49916 AC139749.1-202ENST00000617529 3139 ntBASIC17.13■□□□□ 0.33
LIG3P49916 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.13■□□□□ 0.33
LIG3P49916 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
LIG3P49916 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
LIG3P49916 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.12■□□□□ 0.33
LIG3P49916 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LIG3P49916 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.12■□□□□ 0.33
LIG3P49916 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
LIG3P49916 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.12■□□□□ 0.33
LIG3P49916 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
LIG3P49916 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.12■□□□□ 0.33
LIG3P49916 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.12■□□□□ 0.33
LIG3P49916 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.12■□□□□ 0.33
LIG3P49916 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.12■□□□□ 0.33
LIG3P49916 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
LIG3P49916 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.12■□□□□ 0.33
LIG3P49916 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 AC093525.9-201ENST00000624961 1746 ntBASIC17.12■□□□□ 0.33
LIG3P49916 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.12■□□□□ 0.33
LIG3P49916 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 AC023908.3-201ENST00000564211 3047 ntBASIC17.12■□□□□ 0.33
LIG3P49916 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LIG3P49916 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIG3P49916 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.12■□□□□ 0.33
LIG3P49916 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LIG3P49916 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.11■□□□□ 0.33
LIG3P49916 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.11■□□□□ 0.33
LIG3P49916 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.11■□□□□ 0.33
LIG3P49916 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.11■□□□□ 0.33
LIG3P49916 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms