Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.83■□□□□ 0.44
HTTP42858 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.83■□□□□ 0.44
HTTP42858 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC17.83■□□□□ 0.44
HTTP42858 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
HTTP42858 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.83■□□□□ 0.44
HTTP42858 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
HTTP42858 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.83■□□□□ 0.44
HTTP42858 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HTTP42858 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
HTTP42858 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.82■□□□□ 0.44
HTTP42858 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.82■□□□□ 0.44
HTTP42858 AC145423.3-201ENST00000615987 467 ntBASIC17.82■□□□□ 0.44
HTTP42858 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.82■□□□□ 0.44
HTTP42858 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.82■□□□□ 0.44
HTTP42858 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC17.82■□□□□ 0.44
HTTP42858 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC17.82■□□□□ 0.44
HTTP42858 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.82■□□□□ 0.44
HTTP42858 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HTTP42858 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.82■□□□□ 0.44
HTTP42858 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HTTP42858 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.81■□□□□ 0.44
HTTP42858 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 LETM1P2-201ENST00000597330 2178 ntBASIC17.81■□□□□ 0.44
HTTP42858 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC17.81■□□□□ 0.44
HTTP42858 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.81■□□□□ 0.44
HTTP42858 HOMER2P2-201ENST00000451621 847 ntBASIC17.81■□□□□ 0.44
HTTP42858 SERPINA13P-202ENST00000478994 924 ntBASIC17.81■□□□□ 0.44
HTTP42858 NUP210P1-202ENST00000504322 710 ntBASIC17.81■□□□□ 0.44
HTTP42858 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.81■□□□□ 0.44
HTTP42858 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC17.81■□□□□ 0.44
HTTP42858 AC107373.2-201ENST00000607735 490 ntBASIC17.81■□□□□ 0.44
HTTP42858 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 MIR1202-201ENST00000408529 83 ntBASIC17.81■□□□□ 0.44
HTTP42858 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.81■□□□□ 0.44
HTTP42858 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC17.81■□□□□ 0.44
HTTP42858 EEF1DP6-201ENST00000449232 372 ntBASIC17.81■□□□□ 0.44
HTTP42858 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.81■□□□□ 0.44
HTTP42858 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
HTTP42858 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.81■□□□□ 0.44
HTTP42858 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
HTTP42858 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.81■□□□□ 0.44
HTTP42858 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HTTP42858 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC17.81■□□□□ 0.44
HTTP42858 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.81■□□□□ 0.44
HTTP42858 AC022217.1-201ENST00000521069 738 ntBASIC17.81■□□□□ 0.44
HTTP42858 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC17.81■□□□□ 0.44
HTTP42858 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
HTTP42858 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HTTP42858 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HTTP42858 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.8■□□□□ 0.44
HTTP42858 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HTTP42858 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.8■□□□□ 0.44
HTTP42858 AC012313.1-201ENST00000593393 3059 ntBASIC17.8■□□□□ 0.44
HTTP42858 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HTTP42858 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC17.8■□□□□ 0.44
HTTP42858 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC17.8■□□□□ 0.44
HTTP42858 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HTTP42858 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HTTP42858 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HTTP42858 CD8B2-202ENST00000417670 633 ntBASIC17.8■□□□□ 0.44
HTTP42858 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.8■□□□□ 0.44
HTTP42858 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.8■□□□□ 0.44
HTTP42858 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms