Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 AC092384.3-202ENST00000564646 2873 ntBASIC12.41□□□□□ -0.42
HLA-DMBP28068 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 FAM185BP-201ENST00000443595 716 ntBASIC12.41□□□□□ -0.42
HLA-DMBP28068 MTRF1LP2-201ENST00000506027 1122 ntBASIC12.41□□□□□ -0.42
HLA-DMBP28068 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 AC145285.3-201ENST00000564603 959 ntBASIC12.41□□□□□ -0.42
HLA-DMBP28068 AC069224.1-201ENST00000566372 1715 ntBASIC12.41□□□□□ -0.42
HLA-DMBP28068 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 Z83851.2-201ENST00000609564 659 ntBASIC12.41□□□□□ -0.42
HLA-DMBP28068 AC027601.4-201ENST00000611259 610 ntBASIC12.41□□□□□ -0.42
HLA-DMBP28068 PGM5P2-202ENST00000637225 1043 ntBASIC12.41□□□□□ -0.42
HLA-DMBP28068 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DMBP28068 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DMBP28068 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 PMS2P7-201ENST00000506558 1336 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 AC073347.1-201ENST00000421633 2643 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 RNU1-129P-201ENST00000384064 167 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 MED15P5-201ENST00000423150 992 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 SLC4A1APP2-201ENST00000424054 1259 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 AL513480.1-201ENST00000451731 511 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 AC108751.1-201ENST00000490852 363 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 CXCL1P1-201ENST00000502804 216 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 UNC93B6-202ENST00000528242 690 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 U1.21-201ENST00000580816 167 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 MIR4515-201ENST00000584082 81 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 AL031055.1-201ENST00000606362 631 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 AL592424.1-201ENST00000563624 1536 ntBASIC12.4□□□□□ -0.42
HLA-DMBP28068 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms