Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MSTO2P-201ENST00000314835 1709 ntBASIC15.28■□□□□ 0.04
COL5A1P20908 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.28■□□□□ 0.04
COL5A1P20908 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.28■□□□□ 0.04
COL5A1P20908 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.28■□□□□ 0.04
COL5A1P20908 AP001063.1-201ENST00000568332 529 ntBASIC15.28■□□□□ 0.04
COL5A1P20908 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.28■□□□□ 0.04
COL5A1P20908 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL5A1P20908 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.28■□□□□ 0.04
COL5A1P20908 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL5A1P20908 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.27■□□□□ 0.04
COL5A1P20908 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.04
COL5A1P20908 AP001282.1-201ENST00000531301 1499 ntBASIC15.27■□□□□ 0.04
COL5A1P20908 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 GPAA1P2-201ENST00000417923 928 ntBASIC15.27■□□□□ 0.04
COL5A1P20908 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.27■□□□□ 0.04
COL5A1P20908 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.27■□□□□ 0.04
COL5A1P20908 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.27■□□□□ 0.04
COL5A1P20908 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL5A1P20908 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.27■□□□□ 0.04
COL5A1P20908 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.27■□□□□ 0.04
COL5A1P20908 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
COL5A1P20908 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
COL5A1P20908 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.27■□□□□ 0.03
COL5A1P20908 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
COL5A1P20908 AC134312.5-201ENST00000568031 1313 ntBASIC15.27■□□□□ 0.03
COL5A1P20908 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
COL5A1P20908 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.27■□□□□ 0.03
COL5A1P20908 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.27■□□□□ 0.03
COL5A1P20908 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.27■□□□□ 0.03
COL5A1P20908 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
COL5A1P20908 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.27■□□□□ 0.03
COL5A1P20908 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL5A1P20908 GOLGA2P4-201ENST00000441462 777 ntBASIC15.27■□□□□ 0.03
COL5A1P20908 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.27■□□□□ 0.03
COL5A1P20908 AC007551.1-201ENST00000457394 519 ntBASIC15.27■□□□□ 0.03
COL5A1P20908 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.03
COL5A1P20908 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.27■□□□□ 0.03
COL5A1P20908 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC15.27■□□□□ 0.03
COL5A1P20908 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.27■□□□□ 0.03
COL5A1P20908 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.27■□□□□ 0.03
COL5A1P20908 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.27■□□□□ 0.03
COL5A1P20908 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.26■□□□□ 0.03
COL5A1P20908 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.26■□□□□ 0.03
COL5A1P20908 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
COL5A1P20908 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
COL5A1P20908 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.26■□□□□ 0.03
COL5A1P20908 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
COL5A1P20908 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.26■□□□□ 0.03
COL5A1P20908 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.26■□□□□ 0.03
COL5A1P20908 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.26■□□□□ 0.03
COL5A1P20908 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.26■□□□□ 0.03
COL5A1P20908 AC026954.1-201ENST00000429771 1293 ntBASIC15.26■□□□□ 0.03
COL5A1P20908 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.26■□□□□ 0.03
COL5A1P20908 AC093433.1-201ENST00000458048 571 ntBASIC15.26■□□□□ 0.03
COL5A1P20908 RPL13AP20-201ENST00000459725 609 ntBASIC15.26■□□□□ 0.03
COL5A1P20908 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.26■□□□□ 0.03
COL5A1P20908 FAM86HP-204ENST00000513466 959 ntBASIC15.26■□□□□ 0.03
COL5A1P20908 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.26■□□□□ 0.03
COL5A1P20908 AC009486.1-201ENST00000569860 813 ntBASIC15.26■□□□□ 0.03
COL5A1P20908 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.26■□□□□ 0.03
COL5A1P20908 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.26■□□□□ 0.03
COL5A1P20908 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL5A1P20908 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.26■□□□□ 0.03
COL5A1P20908 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms