Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDNEP1O95476 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.7■□□□□ 0.58
CTDNEP1O95476 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 PPT1-215ENST00000641471 2368 ntBASIC18.69■□□□□ 0.58
CTDNEP1O95476 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 CYP4F24P-201ENST00000586049 1580 ntBASIC18.69■□□□□ 0.58
CTDNEP1O95476 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 AC073347.1-201ENST00000421633 2643 ntBASIC18.69■□□□□ 0.58
CTDNEP1O95476 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 MIR4313-201ENST00000580760 101 ntBASIC18.69■□□□□ 0.58
CTDNEP1O95476 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 HYMAI-201ENST00000635591 3347 ntBASIC18.69■□□□□ 0.58
CTDNEP1O95476 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 AC126177.1-201ENST00000547829 2218 ntBASIC18.69■□□□□ 0.58
CTDNEP1O95476 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CTDNEP1O95476 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDNEP1O95476 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 REXO1L1P-202ENST00000608646 1974 ntBASIC18.68■□□□□ 0.58
CTDNEP1O95476 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 AC243562.2-201ENST00000561247 970 ntBASIC18.68■□□□□ 0.58
CTDNEP1O95476 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CTDNEP1O95476 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTDNEP1O95476 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AC009090.5-201ENST00000624886 2285 ntBASIC18.67■□□□□ 0.58
CTDNEP1O95476 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AC136621.1-201ENST00000624017 2304 ntBASIC18.67■□□□□ 0.58
CTDNEP1O95476 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AC104640.1-201ENST00000562617 2109 ntBASIC18.67■□□□□ 0.58
CTDNEP1O95476 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AC004987.2-201ENST00000395959 1148 ntBASIC18.67■□□□□ 0.58
CTDNEP1O95476 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AC005237.2-201ENST00000434368 219 ntBASIC18.67■□□□□ 0.58
CTDNEP1O95476 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms