Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 AC006449.6-201ENST00000612330 2296 ntBASIC14.42□□□□□ -0.1
SGCEO43556 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
SGCEO43556 AC092474.2-201ENST00000424288 719 ntBASIC14.42□□□□□ -0.1
SGCEO43556 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.42□□□□□ -0.1
SGCEO43556 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 AL513190.1-201ENST00000621254 727 ntBASIC14.42□□□□□ -0.1
SGCEO43556 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.42□□□□□ -0.1
SGCEO43556 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
SGCEO43556 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SGCEO43556 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.42□□□□□ -0.1
SGCEO43556 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SGCEO43556 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.41□□□□□ -0.1
SGCEO43556 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 AC099063.4-201ENST00000641099 1602 ntBASIC14.41□□□□□ -0.1
SGCEO43556 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 AC005622.1-201ENST00000636801 1703 ntBASIC14.41□□□□□ -0.1
SGCEO43556 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.41□□□□□ -0.1
SGCEO43556 AL513523.2-202ENST00000427283 2040 ntBASIC14.41□□□□□ -0.1
SGCEO43556 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 NORAD-201ENST00000565493 5339 ntBASIC14.41□□□□□ -0.1
SGCEO43556 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.41□□□□□ -0.1
SGCEO43556 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.41□□□□□ -0.1
SGCEO43556 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.41□□□□□ -0.1
SGCEO43556 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
SGCEO43556 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.41□□□□□ -0.1
SGCEO43556 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.41□□□□□ -0.1
SGCEO43556 AL161645.1-201ENST00000622716 1255 ntBASIC14.41□□□□□ -0.1
SGCEO43556 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
SGCEO43556 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.41□□□□□ -0.1
SGCEO43556 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.41□□□□□ -0.1
SGCEO43556 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.41□□□□□ -0.1
SGCEO43556 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.41□□□□□ -0.1
SGCEO43556 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SGCEO43556 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SGCEO43556 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms