Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 BCORL1-205ENST00000540052 7127 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 AL353593.2-201ENST00000602529 1483 ntBASIC13.12□□□□□ -0.31
HMGB3O15347 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.12□□□□□ -0.31
HMGB3O15347 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 AC132938.5-201ENST00000624980 1813 ntBASIC13.12□□□□□ -0.31
HMGB3O15347 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.12□□□□□ -0.31
HMGB3O15347 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.12□□□□□ -0.31
HMGB3O15347 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC13.12□□□□□ -0.31
HMGB3O15347 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 COPE-203ENST00000351079 907 ntTSL 2 BASIC13.12□□□□□ -0.31
HMGB3O15347 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC13.12□□□□□ -0.31
HMGB3O15347 MIR662-201ENST00000384847 95 ntBASIC13.12□□□□□ -0.31
HMGB3O15347 FAM220CP-201ENST00000395253 831 ntBASIC13.12□□□□□ -0.31
HMGB3O15347 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC13.12□□□□□ -0.31
HMGB3O15347 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.12□□□□□ -0.31
HMGB3O15347 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 SNORA78-201ENST00000459373 127 ntBASIC13.12□□□□□ -0.31
HMGB3O15347 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC13.12□□□□□ -0.31
HMGB3O15347 DUX4L17-201ENST00000557360 1267 ntBASIC13.12□□□□□ -0.31
HMGB3O15347 AL441883.1-201ENST00000566170 1045 ntBASIC13.12□□□□□ -0.31
HMGB3O15347 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC13.12□□□□□ -0.31
HMGB3O15347 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.12□□□□□ -0.31
HMGB3O15347 AL390719.2-201ENST00000606993 987 ntBASIC13.12□□□□□ -0.31
HMGB3O15347 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC13.12□□□□□ -0.31
HMGB3O15347 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
HMGB3O15347 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HMGB3O15347 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.12□□□□□ -0.31
HMGB3O15347 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HMGB3O15347 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.12□□□□□ -0.31
HMGB3O15347 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HMGB3O15347 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.12□□□□□ -0.31
HMGB3O15347 LRRC15-201ENST00000347624 5883 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC13.11□□□□□ -0.31
HMGB3O15347 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 FOS-208ENST00000555686 1496 ntTSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC13.11□□□□□ -0.31
HMGB3O15347 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 LINC02447-202ENST00000501888 2146 ntBASIC13.11□□□□□ -0.31
HMGB3O15347 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC13.11□□□□□ -0.31
HMGB3O15347 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC13.11□□□□□ -0.31
HMGB3O15347 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC13.11□□□□□ -0.31
HMGB3O15347 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.11□□□□□ -0.31
HMGB3O15347 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 KRT17P2-201ENST00000300992 1314 ntBASIC13.11□□□□□ -0.31
HMGB3O15347 UBC-206ENST00000538617 1303 ntTSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
HMGB3O15347 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HMGB3O15347 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.11□□□□□ -0.31
HMGB3O15347 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
HMGB3O15347 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HMGB3O15347 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms