Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 AL512652.2-201ENST00000625156 1716 ntBASIC20.38■□□□□ 0.85
NPHP1O15259 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
NPHP1O15259 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NPHP1O15259 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
NPHP1O15259 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC20.37■□□□□ 0.85
NPHP1O15259 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC20.37■□□□□ 0.85
NPHP1O15259 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
NPHP1O15259 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 GPAA1P2-202ENST00000606848 1787 ntBASIC20.37■□□□□ 0.85
NPHP1O15259 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP1O15259 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.37■□□□□ 0.85
NPHP1O15259 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
NPHP1O15259 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.37■□□□□ 0.85
NPHP1O15259 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.37■□□□□ 0.85
NPHP1O15259 SPDYE17-201ENST00000412399 783 ntBASIC20.37■□□□□ 0.85
NPHP1O15259 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC20.37■□□□□ 0.85
NPHP1O15259 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP1O15259 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP1O15259 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC20.37■□□□□ 0.85
NPHP1O15259 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP1O15259 AC104596.2-201ENST00000512793 793 ntBASIC20.37■□□□□ 0.85
NPHP1O15259 RPL28-206ENST00000558752 671 ntTSL 3 BASIC20.37■□□□□ 0.85
NPHP1O15259 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC20.37■□□□□ 0.85
NPHP1O15259 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
NPHP1O15259 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC20.37■□□□□ 0.85
NPHP1O15259 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.37■□□□□ 0.85
NPHP1O15259 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
NPHP1O15259 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NPHP1O15259 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
NPHP1O15259 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
NPHP1O15259 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC20.36■□□□□ 0.85
NPHP1O15259 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP1O15259 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP1O15259 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
NPHP1O15259 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP1O15259 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC20.36■□□□□ 0.85
NPHP1O15259 AC007389.4-201ENST00000454674 793 ntBASIC20.36■□□□□ 0.85
NPHP1O15259 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.36■□□□□ 0.85
NPHP1O15259 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP1O15259 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.36■□□□□ 0.85
NPHP1O15259 AL512343.1-201ENST00000605837 169 ntBASIC20.36■□□□□ 0.85
NPHP1O15259 AC099568.2-201ENST00000609194 695 ntBASIC20.36■□□□□ 0.85
NPHP1O15259 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP1O15259 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
NPHP1O15259 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
NPHP1O15259 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.36■□□□□ 0.85
NPHP1O15259 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NPHP1O15259 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
NPHP1O15259 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
NPHP1O15259 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.36■□□□□ 0.85
NPHP1O15259 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP1O15259 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.36■□□□□ 0.85
NPHP1O15259 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
NPHP1O15259 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
NPHP1O15259 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
NPHP1O15259 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
NPHP1O15259 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NPHP1O15259 TMEM14DP-201ENST00000422205 345 ntBASIC20.35■□□□□ 0.85
NPHP1O15259 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC20.35■□□□□ 0.85
NPHP1O15259 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC20.35■□□□□ 0.85
NPHP1O15259 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
NPHP1O15259 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
NPHP1O15259 AC133552.6-201ENST00000613406 534 ntBASIC20.35■□□□□ 0.85
NPHP1O15259 AL139011.1-202ENST00000642063 584 ntBASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms