Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC11.91□□□□□ -0.5
SMKR1H3BMG3 TP73-AS1-210ENST00000637775 1455 ntBASIC11.91□□□□□ -0.5
SMKR1H3BMG3 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 AC091951.1-201ENST00000512854 2465 ntBASIC11.91□□□□□ -0.5
SMKR1H3BMG3 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 DANCR-204ENST00000444958 709 ntTSL 3 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 MIR4492-201ENST00000581627 80 ntBASIC11.91□□□□□ -0.5
SMKR1H3BMG3 SIGLEC29P-201ENST00000599873 1114 ntBASIC11.91□□□□□ -0.5
SMKR1H3BMG3 AC145285.6-201ENST00000604632 637 ntBASIC11.91□□□□□ -0.5
SMKR1H3BMG3 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 UCKL1-AS1-201ENST00000623569 3602 ntBASIC11.91□□□□□ -0.5
SMKR1H3BMG3 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 AL590787.1-201ENST00000568856 1315 ntBASIC11.9□□□□□ -0.5
SMKR1H3BMG3 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 SPDYE21P-201ENST00000413323 827 ntBASIC11.9□□□□□ -0.5
SMKR1H3BMG3 BX664615.1-201ENST00000443558 458 ntBASIC11.9□□□□□ -0.5
SMKR1H3BMG3 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 AC090616.6-201ENST00000582640 721 ntBASIC11.9□□□□□ -0.5
SMKR1H3BMG3 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
SMKR1H3BMG3 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms