Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.2■□□□□ 0.02
TCRBV3S1A0A5B6 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 MROH4P-201ENST00000431302 1578 ntBASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 FGD5P1-202ENST00000614866 2498 ntBASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 TSSC2-201ENST00000450217 709 ntBASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 AC074051.2-201ENST00000565115 352 ntBASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 CICP4-201ENST00000447359 2812 ntBASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TCRBV3S1A0A5B6 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 NORAD-201ENST00000565493 5339 ntBASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 AC139887.3-201ENST00000568585 713 ntBASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 AL139288.1-201ENST00000623748 933 ntBASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 AL805961.1-202ENST00000641562 540 ntBASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TCRBV3S1A0A5B6 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms