Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRFN1Q9P244 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LRFN1Q9P244 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.7■■□□□ 1.06
LRFN1Q9P244 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRFN1Q9P244 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LRFN1Q9P244 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.69■■□□□ 1.06
LRFN1Q9P244 AC096887.2-201ENST00000623443 1957 ntBASIC21.69■■□□□ 1.06
LRFN1Q9P244 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRFN1Q9P244 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRFN1Q9P244 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.69■■□□□ 1.06
LRFN1Q9P244 MIR4281-201ENST00000580852 62 ntBASIC21.69■■□□□ 1.06
LRFN1Q9P244 AC011551.1-201ENST00000614101 683 ntBASIC21.69■■□□□ 1.06
LRFN1Q9P244 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRFN1Q9P244 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.69■■□□□ 1.06
LRFN1Q9P244 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRFN1Q9P244 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.69■■□□□ 1.06
LRFN1Q9P244 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LRFN1Q9P244 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRFN1Q9P244 FOXO3B-201ENST00000395675 1928 ntBASIC21.68■■□□□ 1.06
LRFN1Q9P244 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRFN1Q9P244 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.68■■□□□ 1.06
LRFN1Q9P244 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
LRFN1Q9P244 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRFN1Q9P244 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRFN1Q9P244 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
LRFN1Q9P244 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRFN1Q9P244 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRFN1Q9P244 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
LRFN1Q9P244 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.67■■□□□ 1.06
LRFN1Q9P244 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.67■■□□□ 1.06
LRFN1Q9P244 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRFN1Q9P244 AC010501.1-201ENST00000606270 1962 ntBASIC21.67■■□□□ 1.06
LRFN1Q9P244 AC097639.1-201ENST00000565519 1891 ntBASIC21.66■■□□□ 1.06
LRFN1Q9P244 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRFN1Q9P244 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
LRFN1Q9P244 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRFN1Q9P244 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRFN1Q9P244 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.66■■□□□ 1.06
LRFN1Q9P244 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.66■■□□□ 1.06
LRFN1Q9P244 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRFN1Q9P244 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRFN1Q9P244 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.66■■□□□ 1.06
LRFN1Q9P244 AC021242.3-201ENST00000607598 1377 ntBASIC21.65■■□□□ 1.06
LRFN1Q9P244 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.65■■□□□ 1.06
LRFN1Q9P244 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRFN1Q9P244 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
LRFN1Q9P244 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.64■■□□□ 1.06
LRFN1Q9P244 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
LRFN1Q9P244 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRFN1Q9P244 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRFN1Q9P244 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
LRFN1Q9P244 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRFN1Q9P244 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LRFN1Q9P244 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.64■■□□□ 1.05
LRFN1Q9P244 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.64■■□□□ 1.05
LRFN1Q9P244 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRFN1Q9P244 AC092803.2-201ENST00000564287 1899 ntBASIC21.64■■□□□ 1.05
LRFN1Q9P244 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
LRFN1Q9P244 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRFN1Q9P244 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
LRFN1Q9P244 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRFN1Q9P244 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.63■■□□□ 1.05
LRFN1Q9P244 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.63■■□□□ 1.05
LRFN1Q9P244 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRFN1Q9P244 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
LRFN1Q9P244 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN1Q9P244 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.62■■□□□ 1.05
LRFN1Q9P244 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN1Q9P244 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.62■■□□□ 1.05
LRFN1Q9P244 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.62■■□□□ 1.05
LRFN1Q9P244 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN1Q9P244 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.62■■□□□ 1.05
LRFN1Q9P244 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.62■■□□□ 1.05
LRFN1Q9P244 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN1Q9P244 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN1Q9P244 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN1Q9P244 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.61■■□□□ 1.05
LRFN1Q9P244 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN1Q9P244 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
LRFN1Q9P244 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN1Q9P244 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN1Q9P244 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
LRFN1Q9P244 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.61■■□□□ 1.05
LRFN1Q9P244 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN1Q9P244 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN1Q9P244 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN1Q9P244 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.6■■□□□ 1.05
LRFN1Q9P244 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN1Q9P244 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
LRFN1Q9P244 TSPY9P-201ENST00000440215 945 ntBASIC21.6■■□□□ 1.05
LRFN1Q9P244 TSPY11P-201ENST00000442607 1045 ntBASIC21.6■■□□□ 1.05
LRFN1Q9P244 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.6■■□□□ 1.05
LRFN1Q9P244 UNC93B8-201ENST00000511903 705 ntBASIC21.6■■□□□ 1.05
LRFN1Q9P244 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.6■■□□□ 1.05
LRFN1Q9P244 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.6■■□□□ 1.05
LRFN1Q9P244 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN1Q9P244 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN1Q9P244 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN1Q9P244 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRFN1Q9P244 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms