Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
UBQLN3Q9H347 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
UBQLN3Q9H347 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
UBQLN3Q9H347 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.83■■□□□ 1.09
UBQLN3Q9H347 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
UBQLN3Q9H347 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.08
UBQLN3Q9H347 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.08
UBQLN3Q9H347 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
UBQLN3Q9H347 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
UBQLN3Q9H347 AC022211.4-201ENST00000625094 2161 ntBASIC21.82■■□□□ 1.08
UBQLN3Q9H347 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
UBQLN3Q9H347 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
UBQLN3Q9H347 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
UBQLN3Q9H347 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
UBQLN3Q9H347 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.81■■□□□ 1.08
UBQLN3Q9H347 RARRES2P1-201ENST00000474487 481 ntBASIC21.81■■□□□ 1.08
UBQLN3Q9H347 PVT1_1.1-201ENST00000615125 194 ntBASIC21.81■■□□□ 1.08
UBQLN3Q9H347 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.81■■□□□ 1.08
UBQLN3Q9H347 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
UBQLN3Q9H347 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.8■■□□□ 1.08
UBQLN3Q9H347 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
UBQLN3Q9H347 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
UBQLN3Q9H347 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.79■■□□□ 1.08
UBQLN3Q9H347 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.79■■□□□ 1.08
UBQLN3Q9H347 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
UBQLN3Q9H347 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.79■■□□□ 1.08
UBQLN3Q9H347 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
UBQLN3Q9H347 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
UBQLN3Q9H347 AC019171.1-201ENST00000601251 1056 ntBASIC21.79■■□□□ 1.08
UBQLN3Q9H347 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
UBQLN3Q9H347 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
UBQLN3Q9H347 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
UBQLN3Q9H347 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.78■■□□□ 1.08
UBQLN3Q9H347 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UBQLN3Q9H347 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
UBQLN3Q9H347 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UBQLN3Q9H347 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
UBQLN3Q9H347 AC138932.3-201ENST00000567634 1902 ntBASIC21.78■■□□□ 1.08
UBQLN3Q9H347 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
UBQLN3Q9H347 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.78■■□□□ 1.08
UBQLN3Q9H347 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBQLN3Q9H347 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.77■■□□□ 1.08
UBQLN3Q9H347 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.77■■□□□ 1.08
UBQLN3Q9H347 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBQLN3Q9H347 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.77■■□□□ 1.08
UBQLN3Q9H347 LONRF2P2-201ENST00000439212 571 ntBASIC21.77■■□□□ 1.08
UBQLN3Q9H347 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBQLN3Q9H347 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
UBQLN3Q9H347 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
UBQLN3Q9H347 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
UBQLN3Q9H347 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.77■■□□□ 1.07
UBQLN3Q9H347 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
UBQLN3Q9H347 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBQLN3Q9H347 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBQLN3Q9H347 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBQLN3Q9H347 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.76■■□□□ 1.07
UBQLN3Q9H347 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.76■■□□□ 1.07
UBQLN3Q9H347 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBQLN3Q9H347 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
UBQLN3Q9H347 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 AC103834.1-201ENST00000520383 144 ntBASIC21.75■■□□□ 1.07
UBQLN3Q9H347 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
UBQLN3Q9H347 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
UBQLN3Q9H347 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBQLN3Q9H347 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBQLN3Q9H347 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.73■■□□□ 1.07
UBQLN3Q9H347 MIR4508-201ENST00000584178 70 ntBASIC21.73■■□□□ 1.07
UBQLN3Q9H347 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.73■■□□□ 1.07
UBQLN3Q9H347 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UBQLN3Q9H347 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBQLN3Q9H347 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBQLN3Q9H347 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
UBQLN3Q9H347 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.72■■□□□ 1.07
UBQLN3Q9H347 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.72■■□□□ 1.07
UBQLN3Q9H347 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBQLN3Q9H347 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBQLN3Q9H347 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
UBQLN3Q9H347 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBQLN3Q9H347 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
UBQLN3Q9H347 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
UBQLN3Q9H347 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
UBQLN3Q9H347 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBQLN3Q9H347 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms