Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL12A1Q99715 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.03■□□□□ 0.96
COL12A1Q99715 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL12A1Q99715 ABHD17AP1-201ENST00000358206 933 ntBASIC21.03■□□□□ 0.96
COL12A1Q99715 AC034268.1-201ENST00000441047 882 ntBASIC21.03■□□□□ 0.96
COL12A1Q99715 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.03■□□□□ 0.96
COL12A1Q99715 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.03■□□□□ 0.96
COL12A1Q99715 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
COL12A1Q99715 SLC47A1P1-202ENST00000449666 945 ntBASIC21.02■□□□□ 0.96
COL12A1Q99715 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL12A1Q99715 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
COL12A1Q99715 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.02■□□□□ 0.96
COL12A1Q99715 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL12A1Q99715 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL12A1Q99715 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.02■□□□□ 0.96
COL12A1Q99715 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
COL12A1Q99715 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
COL12A1Q99715 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.01■□□□□ 0.95
COL12A1Q99715 AP002414.2-202ENST00000590929 1450 ntBASIC21.01■□□□□ 0.95
COL12A1Q99715 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.01■□□□□ 0.95
COL12A1Q99715 HLA-L-209ENST00000420110 1011 ntBASIC21.01■□□□□ 0.95
COL12A1Q99715 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.01■□□□□ 0.95
COL12A1Q99715 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL12A1Q99715 AF131216.4-201ENST00000638924 1588 ntBASIC21.01■□□□□ 0.95
COL12A1Q99715 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21■□□□□ 0.95
COL12A1Q99715 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21■□□□□ 0.95
COL12A1Q99715 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21■□□□□ 0.95
COL12A1Q99715 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL12A1Q99715 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL12A1Q99715 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL12A1Q99715 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21■□□□□ 0.95
COL12A1Q99715 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL12A1Q99715 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL12A1Q99715 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL12A1Q99715 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.99■□□□□ 0.95
COL12A1Q99715 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL12A1Q99715 AC066615.1-201ENST00000640911 628 ntBASIC20.99■□□□□ 0.95
COL12A1Q99715 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC20.99■□□□□ 0.95
COL12A1Q99715 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL12A1Q99715 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.99■□□□□ 0.95
COL12A1Q99715 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL12A1Q99715 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL12A1Q99715 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.98■□□□□ 0.95
COL12A1Q99715 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.98■□□□□ 0.95
COL12A1Q99715 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.98■□□□□ 0.95
COL12A1Q99715 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL12A1Q99715 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.98■□□□□ 0.95
COL12A1Q99715 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL12A1Q99715 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL12A1Q99715 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL12A1Q99715 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL12A1Q99715 BX255925.1-201ENST00000566954 1854 ntBASIC20.97■□□□□ 0.95
COL12A1Q99715 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL12A1Q99715 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL12A1Q99715 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL12A1Q99715 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.96■□□□□ 0.95
COL12A1Q99715 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
COL12A1Q99715 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL12A1Q99715 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.96■□□□□ 0.95
COL12A1Q99715 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL12A1Q99715 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.96■□□□□ 0.95
COL12A1Q99715 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
COL12A1Q99715 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.96■□□□□ 0.95
COL12A1Q99715 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL12A1Q99715 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.96■□□□□ 0.95
COL12A1Q99715 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.95
COL12A1Q99715 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
COL12A1Q99715 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL12A1Q99715 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.95■□□□□ 0.94
COL12A1Q99715 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.95■□□□□ 0.94
COL12A1Q99715 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.95■□□□□ 0.94
COL12A1Q99715 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
COL12A1Q99715 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL12A1Q99715 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL12A1Q99715 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
COL12A1Q99715 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL12A1Q99715 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL12A1Q99715 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL12A1Q99715 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.94■□□□□ 0.94
COL12A1Q99715 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL12A1Q99715 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.94■□□□□ 0.94
COL12A1Q99715 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.94■□□□□ 0.94
COL12A1Q99715 AL137784.2-201ENST00000607332 1000 ntBASIC20.94■□□□□ 0.94
COL12A1Q99715 KRT18P10-201ENST00000388836 1287 ntBASIC20.94■□□□□ 0.94
COL12A1Q99715 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL12A1Q99715 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
COL12A1Q99715 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL12A1Q99715 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL12A1Q99715 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL12A1Q99715 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL12A1Q99715 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL12A1Q99715 AC011551.1-201ENST00000614101 683 ntBASIC20.93■□□□□ 0.94
COL12A1Q99715 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL12A1Q99715 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL12A1Q99715 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL12A1Q99715 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL12A1Q99715 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL12A1Q99715 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL12A1Q99715 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL12A1Q99715 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms