Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 WHAMMP2-203ENST00000563942 1603 ntBASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CCDC28AQ8IWP9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28AQ8IWP9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28AQ8IWP9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28AQ8IWP9 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28AQ8IWP9 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28AQ8IWP9 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CCDC28AQ8IWP9 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28AQ8IWP9 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC28AQ8IWP9 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28AQ8IWP9 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC28AQ8IWP9 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC28AQ8IWP9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC28AQ8IWP9 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC28AQ8IWP9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC28AQ8IWP9 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CCDC28AQ8IWP9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC28AQ8IWP9 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC28AQ8IWP9 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC28AQ8IWP9 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC28AQ8IWP9 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC28AQ8IWP9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28AQ8IWP9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28AQ8IWP9 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28AQ8IWP9 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CCDC28AQ8IWP9 AL133380.1-201ENST00000506013 324 ntBASIC19.57■□□□□ 0.72
CCDC28AQ8IWP9 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CCDC28AQ8IWP9 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC28AQ8IWP9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28AQ8IWP9 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28AQ8IWP9 SETD8P1-201ENST00000623146 1180 ntBASIC19.56■□□□□ 0.72
CCDC28AQ8IWP9 AC233723.2-201ENST00000623798 2106 ntBASIC19.56■□□□□ 0.72
CCDC28AQ8IWP9 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28AQ8IWP9 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CCDC28AQ8IWP9 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28AQ8IWP9 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.54■□□□□ 0.72
CCDC28AQ8IWP9 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28AQ8IWP9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC28AQ8IWP9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CCDC28AQ8IWP9 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC28AQ8IWP9 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28AQ8IWP9 DUSP8P3-201ENST00000399571 1760 ntBASIC19.54■□□□□ 0.72
CCDC28AQ8IWP9 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CCDC28AQ8IWP9 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 AC096887.2-201ENST00000623443 1957 ntBASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28AQ8IWP9 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28AQ8IWP9 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC28AQ8IWP9 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.52■□□□□ 0.71
CCDC28AQ8IWP9 AL137060.1-201ENST00000618151 2648 ntBASIC19.52■□□□□ 0.71
CCDC28AQ8IWP9 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.52■□□□□ 0.71
CCDC28AQ8IWP9 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28AQ8IWP9 AC100797.4-201ENST00000631653 1827 ntBASIC19.51■□□□□ 0.71
CCDC28AQ8IWP9 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28AQ8IWP9 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC28AQ8IWP9 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms