Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC31.78■■■□□ 2.68
HOXC9P31274 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC31.78■■■□□ 2.68
HOXC9P31274 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
HOXC9P31274 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC31.77■■■□□ 2.68
HOXC9P31274 AC010997.5-201ENST00000609182 354 ntBASIC31.77■■■□□ 2.68
HOXC9P31274 AL117332.1-201ENST00000622628 974 ntBASIC31.77■■■□□ 2.68
HOXC9P31274 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.76■■■□□ 2.68
HOXC9P31274 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC31.76■■■□□ 2.67
HOXC9P31274 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC31.76■■■□□ 2.67
HOXC9P31274 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC31.76■■■□□ 2.67
HOXC9P31274 RPP21-222ENST00000433076 577 ntTSL 2 BASIC31.76■■■□□ 2.67
HOXC9P31274 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC31.76■■■□□ 2.67
HOXC9P31274 AF131216.4-201ENST00000638924 1588 ntBASIC31.76■■■□□ 2.67
HOXC9P31274 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC31.75■■■□□ 2.67
HOXC9P31274 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
HOXC9P31274 LSM4-201ENST00000252816 986 ntTSL 2 BASIC31.75■■■□□ 2.67
HOXC9P31274 TK2-202ENST00000417693 1046 ntTSL 2 BASIC31.75■■■□□ 2.67
HOXC9P31274 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC31.75■■■□□ 2.67
HOXC9P31274 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.75■■■□□ 2.67
HOXC9P31274 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
HOXC9P31274 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
HOXC9P31274 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
HOXC9P31274 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC31.75■■■□□ 2.67
HOXC9P31274 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC31.74■■■□□ 2.67
HOXC9P31274 SSSCA1-AS1-201ENST00000567594 614 ntBASIC31.74■■■□□ 2.67
HOXC9P31274 SRR-208ENST00000576848 588 ntTSL 4 BASIC31.74■■■□□ 2.67
HOXC9P31274 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.74■■■□□ 2.67
HOXC9P31274 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC31.74■■■□□ 2.67
HOXC9P31274 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC31.74■■■□□ 2.67
HOXC9P31274 FOXO3B-201ENST00000395675 1928 ntBASIC31.73■■■□□ 2.67
HOXC9P31274 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
HOXC9P31274 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC31.73■■■□□ 2.67
HOXC9P31274 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC31.73■■■□□ 2.67
HOXC9P31274 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC31.72■■■□□ 2.67
HOXC9P31274 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
HOXC9P31274 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC31.71■■■□□ 2.67
HOXC9P31274 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
HOXC9P31274 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
HOXC9P31274 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC31.71■■■□□ 2.67
HOXC9P31274 MIR3621-201ENST00000580529 85 ntBASIC31.71■■■□□ 2.67
HOXC9P31274 MTDHP2-201ENST00000601468 714 ntBASIC31.71■■■□□ 2.67
HOXC9P31274 MIR6724-1-201ENST00000616420 92 ntBASIC31.71■■■□□ 2.67
HOXC9P31274 MIR6724-2-201ENST00000616483 92 ntBASIC31.71■■■□□ 2.67
HOXC9P31274 MIR6724-4-201ENST00000617390 92 ntBASIC31.71■■■□□ 2.67
HOXC9P31274 MIR6724-3-201ENST00000622482 92 ntBASIC31.71■■■□□ 2.67
HOXC9P31274 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC31.71■■■□□ 2.67
HOXC9P31274 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
HOXC9P31274 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
HOXC9P31274 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC31.7■■■□□ 2.67
HOXC9P31274 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
HOXC9P31274 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
HOXC9P31274 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
HOXC9P31274 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
HOXC9P31274 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
HOXC9P31274 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.69■■■□□ 2.66
HOXC9P31274 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
HOXC9P31274 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
HOXC9P31274 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
HOXC9P31274 MIR638-201ENST00000385237 100 ntBASIC31.68■■■□□ 2.66
HOXC9P31274 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
HOXC9P31274 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
HOXC9P31274 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC31.68■■■□□ 2.66
HOXC9P31274 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
HOXC9P31274 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
HOXC9P31274 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
HOXC9P31274 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC31.67■■■□□ 2.66
HOXC9P31274 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
HOXC9P31274 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
HOXC9P31274 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31.67■■■□□ 2.66
HOXC9P31274 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC31.66■■■□□ 2.66
HOXC9P31274 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
HOXC9P31274 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC31.66■■■□□ 2.66
HOXC9P31274 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC31.66■■■□□ 2.66
HOXC9P31274 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC31.66■■■□□ 2.66
HOXC9P31274 EXOG-217ENST00000630638 197 ntTSL 5 BASIC31.66■■■□□ 2.66
HOXC9P31274 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
HOXC9P31274 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
HOXC9P31274 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC31.65■■■□□ 2.66
HOXC9P31274 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC31.65■■■□□ 2.66
HOXC9P31274 CLTA-210ENST00000540080 989 ntTSL 2 BASIC31.65■■■□□ 2.66
HOXC9P31274 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC31.65■■■□□ 2.66
HOXC9P31274 AC096887.2-201ENST00000623443 1957 ntBASIC31.65■■■□□ 2.66
HOXC9P31274 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
HOXC9P31274 AL136116.3-201ENST00000402907 1138 ntBASIC31.64■■■□□ 2.66
HOXC9P31274 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
HOXC9P31274 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC31.63■■■□□ 2.65
HOXC9P31274 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
HOXC9P31274 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
HOXC9P31274 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
HOXC9P31274 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
HOXC9P31274 AL139246.5-201ENST00000606645 996 ntBASIC31.62■■■□□ 2.65
HOXC9P31274 ERN1-208ENST00000606895 2068 ntBASIC31.61■■■□□ 2.65
HOXC9P31274 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
HOXC9P31274 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
HOXC9P31274 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
HOXC9P31274 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC31.61■■■□□ 2.65
HOXC9P31274 MIR4466-201ENST00000606121 54 ntBASIC31.61■■■□□ 2.65
HOXC9P31274 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
HOXC9P31274 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
HOXC9P31274 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms