Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22■■□□□ 1.11
HMGN4O00479 RNF126P1-201ENST00000567452 1320 ntBASIC22■■□□□ 1.11
HMGN4O00479 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22■■□□□ 1.11
HMGN4O00479 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGN4O00479 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGN4O00479 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGN4O00479 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGN4O00479 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
HMGN4O00479 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.99■■□□□ 1.11
HMGN4O00479 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGN4O00479 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.99■■□□□ 1.11
HMGN4O00479 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGN4O00479 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGN4O00479 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
HMGN4O00479 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGN4O00479 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGN4O00479 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.98■■□□□ 1.11
HMGN4O00479 MIR6089-201ENST00000616698 64 ntBASIC21.98■■□□□ 1.11
HMGN4O00479 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGN4O00479 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGN4O00479 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGN4O00479 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGN4O00479 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGN4O00479 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGN4O00479 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGN4O00479 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.97■■□□□ 1.11
HMGN4O00479 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGN4O00479 AC133552.2-201ENST00000619106 1032 ntBASIC21.97■■□□□ 1.11
HMGN4O00479 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGN4O00479 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGN4O00479 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGN4O00479 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGN4O00479 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGN4O00479 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGN4O00479 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGN4O00479 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGN4O00479 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGN4O00479 KRT18P10-201ENST00000388836 1287 ntBASIC21.96■■□□□ 1.11
HMGN4O00479 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGN4O00479 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGN4O00479 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.11
HMGN4O00479 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGN4O00479 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGN4O00479 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGN4O00479 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
HMGN4O00479 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGN4O00479 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGN4O00479 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGN4O00479 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
HMGN4O00479 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGN4O00479 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.94■■□□□ 1.1
HMGN4O00479 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGN4O00479 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
HMGN4O00479 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HMGN4O00479 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGN4O00479 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGN4O00479 LINC00543-201ENST00000567234 1845 ntBASIC21.93■■□□□ 1.1
HMGN4O00479 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGN4O00479 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGN4O00479 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGN4O00479 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.92■■□□□ 1.1
HMGN4O00479 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGN4O00479 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGN4O00479 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGN4O00479 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGN4O00479 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGN4O00479 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGN4O00479 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGN4O00479 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGN4O00479 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGN4O00479 FOXO3B-201ENST00000395675 1928 ntBASIC21.92■■□□□ 1.1
HMGN4O00479 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGN4O00479 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGN4O00479 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGN4O00479 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGN4O00479 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGN4O00479 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGN4O00479 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.9■■□□□ 1.1
HMGN4O00479 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGN4O00479 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGN4O00479 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.9■■□□□ 1.1
HMGN4O00479 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.9■■□□□ 1.1
HMGN4O00479 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.9■■□□□ 1.1
HMGN4O00479 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGN4O00479 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGN4O00479 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
HMGN4O00479 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
HMGN4O00479 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGN4O00479 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
HMGN4O00479 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
HMGN4O00479 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
HMGN4O00479 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.89■■□□□ 1.1
HMGN4O00479 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
HMGN4O00479 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
HMGN4O00479 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
HMGN4O00479 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.89■■□□□ 1.09
HMGN4O00479 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HMGN4O00479 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.89■■□□□ 1.09
HMGN4O00479 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HMGN4O00479 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms