Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV4A0A0B4J268 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV4A0A0B4J268 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC16.92■□□□□ 0.3
TRAV4A0A0B4J268 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV4A0A0B4J268 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 AC138932.3-201ENST00000567634 1902 ntBASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAV4A0A0B4J268 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV4A0A0B4J268 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV4A0A0B4J268 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TRAV4A0A0B4J268 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TRAV4A0A0B4J268 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV4A0A0B4J268 SLC6A10P-202ENST00000431994 2058 ntBASIC16.9■□□□□ 0.3
TRAV4A0A0B4J268 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TRAV4A0A0B4J268 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRAV4A0A0B4J268 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRAV4A0A0B4J268 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TRAV4A0A0B4J268 AP003733.4-201ENST00000623785 1697 ntBASIC16.89■□□□□ 0.29
TRAV4A0A0B4J268 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAV4A0A0B4J268 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV4A0A0B4J268 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TRAV4A0A0B4J268 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV4A0A0B4J268 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV4A0A0B4J268 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV4A0A0B4J268 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TRAV4A0A0B4J268 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 RARA-203ENST00000394086 2008 ntTSL 2 BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 AC133552.2-201ENST00000619106 1032 ntBASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 AC009831.1-201ENST00000580420 1582 ntBASIC16.88■□□□□ 0.29
TRAV4A0A0B4J268 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRAV4A0A0B4J268 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV4A0A0B4J268 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC16.87■□□□□ 0.29
TRAV4A0A0B4J268 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV4A0A0B4J268 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV4A0A0B4J268 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRAV4A0A0B4J268 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV4A0A0B4J268 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV4A0A0B4J268 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV4A0A0B4J268 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC16.86■□□□□ 0.29
TRAV4A0A0B4J268 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV4A0A0B4J268 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV4A0A0B4J268 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV4A0A0B4J268 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV4A0A0B4J268 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV4A0A0B4J268 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV4A0A0B4J268 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV4A0A0B4J268 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV4A0A0B4J268 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC16.83■□□□□ 0.28
TRAV4A0A0B4J268 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV4A0A0B4J268 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
TRAV4A0A0B4J268 AC093323.1-202ENST00000635031 2045 ntBASIC16.83■□□□□ 0.28
TRAV4A0A0B4J268 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
TRAV4A0A0B4J268 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV4A0A0B4J268 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAV4A0A0B4J268 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC16.82■□□□□ 0.28
TRAV4A0A0B4J268 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV4A0A0B4J268 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms