Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 MIR6090-201ENST00000622481 60 ntBASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 EP400NL-214ENST00000641289 2402 ntBASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
TRAV1-1A0A0B4J248 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 CHML-205ENST00000638160 705 ntTSL 3 BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18.47■□□□□ 0.55
TRAV1-1A0A0B4J248 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV1-1A0A0B4J248 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV1-1A0A0B4J248 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC18.45■□□□□ 0.54
TRAV1-1A0A0B4J248 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV1-1A0A0B4J248 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TRAV1-1A0A0B4J248 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV1-1A0A0B4J248 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TRAV1-1A0A0B4J248 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TRAV1-1A0A0B4J248 AC137767.1-201ENST00000602918 1920 ntBASIC18.45■□□□□ 0.54
TRAV1-1A0A0B4J248 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.44■□□□□ 0.54
TRAV1-1A0A0B4J248 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TRAV1-1A0A0B4J248 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV1-1A0A0B4J248 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV1-1A0A0B4J248 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
TRAV1-1A0A0B4J248 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV1-1A0A0B4J248 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV1-1A0A0B4J248 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV1-1A0A0B4J248 RPS2-210ENST00000530225 765 ntTSL 2 BASIC18.43■□□□□ 0.54
TRAV1-1A0A0B4J248 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC18.43■□□□□ 0.54
TRAV1-1A0A0B4J248 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV1-1A0A0B4J248 AC127496.7-201ENST00000625110 1798 ntBASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV1-1A0A0B4J248 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV1-1A0A0B4J248 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV1-1A0A0B4J248 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV1-1A0A0B4J248 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAV1-1A0A0B4J248 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV1-1A0A0B4J248 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAV1-1A0A0B4J248 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV1-1A0A0B4J248 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV1-1A0A0B4J248 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV1-1A0A0B4J248 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV1-1A0A0B4J248 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV1-1A0A0B4J248 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms