Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHA3Q9Y5H8 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDHA3Q9Y5H8 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PCDHA3Q9Y5H8 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.95■□□□□ 0.3
PCDHA3Q9Y5H8 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 AL662844.1-201ENST00000546340 181 ntBASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 HLA-A-201ENST00000376802 1334 ntBASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 PMS2P7-201ENST00000506558 1336 ntBASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 BCAR1-209ENST00000546196 1340 ntBASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PCDHA3Q9Y5H8 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 AC136621.1-201ENST00000624017 2304 ntBASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 AP001282.1-201ENST00000531301 1499 ntBASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 KRT19P2-202ENST00000557173 1012 ntBASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 AC145285.3-201ENST00000564603 959 ntBASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 WASH6P-202ENST00000359512 1437 ntBASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 TNRC18P2-201ENST00000417666 2714 ntBASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCDHA3Q9Y5H8 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.92■□□□□ 0.3
PCDHA3Q9Y5H8 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms