Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC12.56□□□□□ -0.4
CCDC140Q96MF4 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 KRT18P13-201ENST00000400056 1290 ntBASIC12.55□□□□□ -0.4
CCDC140Q96MF4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 KRT18P32-201ENST00000424695 1287 ntBASIC12.55□□□□□ -0.4
CCDC140Q96MF4 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 AC093520.2-201ENST00000561830 333 ntBASIC12.55□□□□□ -0.4
CCDC140Q96MF4 AC055717.3-201ENST00000622967 595 ntBASIC12.55□□□□□ -0.4
CCDC140Q96MF4 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
CCDC140Q96MF4 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 FAM58DP-201ENST00000428076 619 ntBASIC12.54□□□□□ -0.4
CCDC140Q96MF4 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 AC004835.2-201ENST00000603762 682 ntBASIC12.54□□□□□ -0.4
CCDC140Q96MF4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms