Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS39Q96JC1 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS39Q96JC1 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS39Q96JC1 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS39Q96JC1 AC092919.2-201ENST00000623631 1645 ntBASIC16.32■□□□□ 0.2
VPS39Q96JC1 AC116407.3-201ENST00000623905 1129 ntBASIC16.32■□□□□ 0.2
VPS39Q96JC1 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS39Q96JC1 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VPS39Q96JC1 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS39Q96JC1 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS39Q96JC1 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 HCG4B-203ENST00000450128 991 ntBASIC16.31■□□□□ 0.2
VPS39Q96JC1 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 AL662844.1-201ENST00000546340 181 ntBASIC16.31■□□□□ 0.2
VPS39Q96JC1 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 AP001005.1-201ENST00000571755 1248 ntBASIC16.31■□□□□ 0.2
VPS39Q96JC1 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 AC010507.1-201ENST00000633895 436 ntBASIC16.31■□□□□ 0.2
VPS39Q96JC1 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VPS39Q96JC1 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS39Q96JC1 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS39Q96JC1 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS39Q96JC1 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS39Q96JC1 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS39Q96JC1 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS39Q96JC1 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS39Q96JC1 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 RNA5SP419-201ENST00000515908 135 ntBASIC16.3■□□□□ 0.2
VPS39Q96JC1 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS39Q96JC1 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS39Q96JC1 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VPS39Q96JC1 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS39Q96JC1 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS39Q96JC1 AC092384.3-202ENST00000564646 2873 ntBASIC16.29■□□□□ 0.2
VPS39Q96JC1 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS39Q96JC1 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS39Q96JC1 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms