Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CPNE4Q96A23 AL592424.1-201ENST00000563624 1536 ntBASIC14.6□□□□□ -0.07
CPNE4Q96A23 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.6□□□□□ -0.07
CPNE4Q96A23 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CPNE4Q96A23 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.6□□□□□ -0.07
CPNE4Q96A23 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CPNE4Q96A23 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CPNE4Q96A23 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.6□□□□□ -0.07
CPNE4Q96A23 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CPNE4Q96A23 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CPNE4Q96A23 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CPNE4Q96A23 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.6□□□□□ -0.07
CPNE4Q96A23 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.6□□□□□ -0.07
CPNE4Q96A23 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CPNE4Q96A23 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.59□□□□□ -0.07
CPNE4Q96A23 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CPNE4Q96A23 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CPNE4Q96A23 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.58□□□□□ -0.07
CPNE4Q96A23 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
CPNE4Q96A23 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.58□□□□□ -0.07
CPNE4Q96A23 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CPNE4Q96A23 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CPNE4Q96A23 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CPNE4Q96A23 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.07
CPNE4Q96A23 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 AL645939.2-201ENST00000427340 991 ntBASIC14.58□□□□□ -0.08
CPNE4Q96A23 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 Z92544.3-201ENST00000624747 417 ntBASIC14.58□□□□□ -0.08
CPNE4Q96A23 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.58□□□□□ -0.08
CPNE4Q96A23 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
CPNE4Q96A23 AC005052.1-201ENST00000625181 2492 ntBASIC14.58□□□□□ -0.08
CPNE4Q96A23 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms