Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AL121912.1-201ENST00000603683 238 ntBASIC18.46■□□□□ 0.55
ERCC4Q92889 FAM215A-202ENST00000632077 792 ntBASIC18.46■□□□□ 0.55
ERCC4Q92889 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
ERCC4Q92889 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.46■□□□□ 0.55
ERCC4Q92889 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.46■□□□□ 0.55
ERCC4Q92889 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 NORAD-201ENST00000565493 5339 ntBASIC18.46■□□□□ 0.55
ERCC4Q92889 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ERCC4Q92889 PPT1-215ENST00000641471 2368 ntBASIC18.46■□□□□ 0.55
ERCC4Q92889 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
ERCC4Q92889 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.45■□□□□ 0.54
ERCC4Q92889 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
ERCC4Q92889 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.45■□□□□ 0.54
ERCC4Q92889 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.45■□□□□ 0.54
ERCC4Q92889 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
ERCC4Q92889 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.45■□□□□ 0.54
ERCC4Q92889 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.45■□□□□ 0.54
ERCC4Q92889 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 FAM185BP-201ENST00000443595 716 ntBASIC18.45■□□□□ 0.54
ERCC4Q92889 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.45■□□□□ 0.54
ERCC4Q92889 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.45■□□□□ 0.54
ERCC4Q92889 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.45■□□□□ 0.54
ERCC4Q92889 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 AC020765.3-201ENST00000613051 740 ntBASIC18.45■□□□□ 0.54
ERCC4Q92889 AC005593.1-201ENST00000624894 515 ntBASIC18.45■□□□□ 0.54
ERCC4Q92889 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
ERCC4Q92889 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
ERCC4Q92889 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.45■□□□□ 0.54
ERCC4Q92889 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.45■□□□□ 0.54
ERCC4Q92889 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
ERCC4Q92889 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC18.45■□□□□ 0.54
ERCC4Q92889 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
ERCC4Q92889 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC4Q92889 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.45■□□□□ 0.54
ERCC4Q92889 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.44■□□□□ 0.54
ERCC4Q92889 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC4Q92889 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC4Q92889 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
ERCC4Q92889 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC4Q92889 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC4Q92889 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC4Q92889 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 KRT18P67-201ENST00000432816 1264 ntBASIC18.44■□□□□ 0.54
ERCC4Q92889 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC4Q92889 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.44■□□□□ 0.54
ERCC4Q92889 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC4Q92889 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC4Q92889 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC4Q92889 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC4Q92889 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC4Q92889 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC4Q92889 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC4Q92889 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
ERCC4Q92889 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC4Q92889 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC4Q92889 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms