Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLHC1Q8NHS4 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 HCG4B-203ENST00000450128 991 ntBASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 U82695.1-201ENST00000635752 1889 ntBASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLHC1Q8NHS4 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 MIR648-201ENST00000385046 94 ntBASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 PMS2P4-201ENST00000412466 1052 ntBASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 AC009078.2-202ENST00000463353 338 ntBASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 AC093909.1-201ENST00000504731 1122 ntBASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
CLHC1Q8NHS4 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 AC092919.2-201ENST00000623631 1645 ntBASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms