Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 SPDYE22P-201ENST00000582158 798 ntBASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 AC025048.3-201ENST00000590609 569 ntBASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 AC005702.4-201ENST00000618393 416 ntBASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 AC004461.2-201ENST00000629517 803 ntBASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 FO393414.2-201ENST00000405153 598 ntBASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 AZGP1P1-201ENST00000411909 902 ntBASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 SDHAP3-202ENST00000515467 728 ntBASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 AL132655.2-201ENST00000596276 594 ntBASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC60Q8IWA6 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 KRT8P37-201ENST00000451609 1420 ntBASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 AC134407.2-201ENST00000625089 1978 ntBASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 AL662799.1-202ENST00000614205 422 ntBASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CCDC60Q8IWA6 PCDH8P1-201ENST00000428983 2773 ntBASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms