Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.52■□□□□ 0.39
KRT39Q6A163 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
KRT39Q6A163 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.52■□□□□ 0.39
KRT39Q6A163 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.39
KRT39Q6A163 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
KRT39Q6A163 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 FAM58DP-201ENST00000428076 619 ntBASIC17.51■□□□□ 0.39
KRT39Q6A163 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.51■□□□□ 0.39
KRT39Q6A163 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.51■□□□□ 0.39
KRT39Q6A163 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.51■□□□□ 0.39
KRT39Q6A163 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.51■□□□□ 0.39
KRT39Q6A163 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 AC008894.3-201ENST00000624324 3103 ntBASIC17.51■□□□□ 0.39
KRT39Q6A163 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.51■□□□□ 0.39
KRT39Q6A163 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.51■□□□□ 0.39
KRT39Q6A163 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
KRT39Q6A163 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
KRT39Q6A163 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
KRT39Q6A163 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.5■□□□□ 0.39
KRT39Q6A163 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
KRT39Q6A163 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
KRT39Q6A163 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.5■□□□□ 0.39
KRT39Q6A163 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
KRT39Q6A163 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.5■□□□□ 0.39
KRT39Q6A163 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.5■□□□□ 0.39
KRT39Q6A163 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.5■□□□□ 0.39
KRT39Q6A163 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
KRT39Q6A163 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
KRT39Q6A163 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.5■□□□□ 0.39
KRT39Q6A163 RARRES2P9-201ENST00000565168 469 ntBASIC17.5■□□□□ 0.39
KRT39Q6A163 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.5■□□□□ 0.39
KRT39Q6A163 AC134684.3-201ENST00000641758 218 ntBASIC17.5■□□□□ 0.39
KRT39Q6A163 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.5■□□□□ 0.39
KRT39Q6A163 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
KRT39Q6A163 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
KRT39Q6A163 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.5■□□□□ 0.39
KRT39Q6A163 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
KRT39Q6A163 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.5■□□□□ 0.39
KRT39Q6A163 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
KRT39Q6A163 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
KRT39Q6A163 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.49■□□□□ 0.39
KRT39Q6A163 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
KRT39Q6A163 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.49■□□□□ 0.39
KRT39Q6A163 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
KRT39Q6A163 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
KRT39Q6A163 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 AC004967.1-201ENST00000453589 447 ntBASIC17.49■□□□□ 0.39
KRT39Q6A163 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.49■□□□□ 0.39
KRT39Q6A163 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
KRT39Q6A163 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.49■□□□□ 0.39
KRT39Q6A163 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 AC023511.2-201ENST00000618803 211 ntBASIC17.49■□□□□ 0.39
KRT39Q6A163 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
KRT39Q6A163 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
KRT39Q6A163 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 AP001282.1-201ENST00000531301 1499 ntBASIC17.49■□□□□ 0.39
KRT39Q6A163 AC008741.2-201ENST00000612792 3115 ntBASIC17.49■□□□□ 0.39
KRT39Q6A163 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
KRT39Q6A163 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.49■□□□□ 0.39
KRT39Q6A163 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
KRT39Q6A163 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms