Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SRP54P61011 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SRP54P61011 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
SRP54P61011 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
SRP54P61011 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
SRP54P61011 AC018695.7-201ENST00000624587 2492 ntBASIC16.02■□□□□ 0.16
SRP54P61011 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
SRP54P61011 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SRP54P61011 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SRP54P61011 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SRP54P61011 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.02■□□□□ 0.16
SRP54P61011 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.02■□□□□ 0.16
SRP54P61011 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SRP54P61011 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.02■□□□□ 0.16
SRP54P61011 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.02■□□□□ 0.16
SRP54P61011 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.02■□□□□ 0.16
SRP54P61011 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.02■□□□□ 0.16
SRP54P61011 AC026979.3-201ENST00000607315 403 ntBASIC16.02■□□□□ 0.16
SRP54P61011 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SRP54P61011 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
SRP54P61011 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.02■□□□□ 0.16
SRP54P61011 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
SRP54P61011 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SRP54P61011 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SRP54P61011 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.02■□□□□ 0.15
SRP54P61011 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.02■□□□□ 0.15
SRP54P61011 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
SRP54P61011 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
SRP54P61011 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SRP54P61011 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.02■□□□□ 0.15
SRP54P61011 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.02■□□□□ 0.15
SRP54P61011 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SRP54P61011 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SRP54P61011 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.01■□□□□ 0.15
SRP54P61011 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 AC087499.5-201ENST00000452760 1342 ntBASIC16.01■□□□□ 0.15
SRP54P61011 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.01■□□□□ 0.15
SRP54P61011 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.01■□□□□ 0.15
SRP54P61011 AC190387.1-201ENST00000551683 408 ntBASIC16.01■□□□□ 0.15
SRP54P61011 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.01■□□□□ 0.15
SRP54P61011 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SRP54P61011 UBALD1-205ENST00000590891 2641 ntBASIC16.01■□□□□ 0.15
SRP54P61011 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SRP54P61011 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.01■□□□□ 0.15
SRP54P61011 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
SRP54P61011 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.01■□□□□ 0.15
SRP54P61011 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.01■□□□□ 0.15
SRP54P61011 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.01■□□□□ 0.15
SRP54P61011 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.01■□□□□ 0.15
SRP54P61011 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SRP54P61011 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.01■□□□□ 0.15
SRP54P61011 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SRP54P61011 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16■□□□□ 0.15
SRP54P61011 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SRP54P61011 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SRP54P61011 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
SRP54P61011 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16■□□□□ 0.15
SRP54P61011 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16■□□□□ 0.15
SRP54P61011 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16■□□□□ 0.15
SRP54P61011 SERBP1P5-201ENST00000510079 1181 ntBASIC16■□□□□ 0.15
SRP54P61011 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16■□□□□ 0.15
SRP54P61011 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SRP54P61011 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16■□□□□ 0.15
SRP54P61011 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16■□□□□ 0.15
SRP54P61011 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SRP54P61011 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16■□□□□ 0.15
SRP54P61011 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
SRP54P61011 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
SRP54P61011 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16■□□□□ 0.15
SRP54P61011 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms