Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
FOXA1P55317 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
FOXA1P55317 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.72■□□□□ 0.11
FOXA1P55317 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.72■□□□□ 0.11
FOXA1P55317 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.72■□□□□ 0.11
FOXA1P55317 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.72■□□□□ 0.11
FOXA1P55317 KRT18P2-201ENST00000447938 1258 ntBASIC15.72■□□□□ 0.11
FOXA1P55317 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 AC093909.1-201ENST00000504731 1122 ntBASIC15.72■□□□□ 0.11
FOXA1P55317 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.72■□□□□ 0.11
FOXA1P55317 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.72■□□□□ 0.11
FOXA1P55317 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.72■□□□□ 0.11
FOXA1P55317 AC004877.2-201ENST00000623941 599 ntBASIC15.72■□□□□ 0.11
FOXA1P55317 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 AL589702.1-201ENST00000641229 1509 ntBASIC15.72■□□□□ 0.11
FOXA1P55317 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA1P55317 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA1P55317 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
FOXA1P55317 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.71■□□□□ 0.11
FOXA1P55317 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA1P55317 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
FOXA1P55317 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA1P55317 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA1P55317 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
FOXA1P55317 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
FOXA1P55317 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.71■□□□□ 0.11
FOXA1P55317 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA1P55317 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.71■□□□□ 0.11
FOXA1P55317 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.71■□□□□ 0.11
FOXA1P55317 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.71■□□□□ 0.11
FOXA1P55317 AC007064.4-201ENST00000637740 555 ntBASIC15.71■□□□□ 0.11
FOXA1P55317 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA1P55317 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA1P55317 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA1P55317 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.71■□□□□ 0.1
FOXA1P55317 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
FOXA1P55317 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.71■□□□□ 0.1
FOXA1P55317 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.71■□□□□ 0.1
FOXA1P55317 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
FOXA1P55317 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
FOXA1P55317 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
FOXA1P55317 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.7■□□□□ 0.1
FOXA1P55317 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.7■□□□□ 0.1
FOXA1P55317 BCAR1-209ENST00000546196 1340 ntBASIC15.7■□□□□ 0.1
FOXA1P55317 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
FOXA1P55317 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA1P55317 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA1P55317 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA1P55317 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.7■□□□□ 0.1
FOXA1P55317 AC079776.4-201ENST00000511039 504 ntBASIC15.7■□□□□ 0.1
FOXA1P55317 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 KRT126P-201ENST00000549467 1181 ntBASIC15.7■□□□□ 0.1
FOXA1P55317 KRT19P2-202ENST00000557173 1012 ntBASIC15.7■□□□□ 0.1
FOXA1P55317 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.7■□□□□ 0.1
FOXA1P55317 AC034105.1-201ENST00000563488 319 ntBASIC15.7■□□□□ 0.1
FOXA1P55317 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.7■□□□□ 0.1
FOXA1P55317 AC064836.3-201ENST00000607928 673 ntBASIC15.7■□□□□ 0.1
FOXA1P55317 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.7■□□□□ 0.1
FOXA1P55317 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.7■□□□□ 0.1
FOXA1P55317 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA1P55317 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA1P55317 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA1P55317 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA1P55317 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
FOXA1P55317 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA1P55317 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms