Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CDH12P55289 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH12P55289 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH12P55289 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH12P55289 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH12P55289 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH12P55289 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.18■□□□□ 0.02
CDH12P55289 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH12P55289 RN7SL510P-201ENST00000581311 263 ntBASIC15.18■□□□□ 0.02
CDH12P55289 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.18■□□□□ 0.02
CDH12P55289 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH12P55289 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH12P55289 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH12P55289 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH12P55289 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH12P55289 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH12P55289 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CDH12P55289 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.17■□□□□ 0.02
CDH12P55289 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CDH12P55289 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CDH12P55289 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH12P55289 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH12P55289 AC117500.6-201ENST00000624871 588 ntBASIC15.17■□□□□ 0.02
CDH12P55289 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 AC005622.1-201ENST00000636801 1703 ntBASIC15.17■□□□□ 0.02
CDH12P55289 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH12P55289 AL592424.1-201ENST00000563624 1536 ntBASIC15.17■□□□□ 0.02
CDH12P55289 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH12P55289 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH12P55289 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH12P55289 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CDH12P55289 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
CDH12P55289 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH12P55289 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CDH12P55289 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH12P55289 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH12P55289 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
CDH12P55289 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CDH12P55289 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CDH12P55289 PPT1-215ENST00000641471 2368 ntBASIC15.16■□□□□ 0.02
CDH12P55289 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH12P55289 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms