Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC22.13■■□□□ 1.13
MSH6P52701 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC22.13■■□□□ 1.13
MSH6P52701 TSACC-208ENST00000481479 741 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH6P52701 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH6P52701 AP002490.2-201ENST00000524791 560 ntBASIC22.13■■□□□ 1.13
MSH6P52701 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC22.13■■□□□ 1.13
MSH6P52701 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC22.13■■□□□ 1.13
MSH6P52701 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC22.13■■□□□ 1.13
MSH6P52701 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC22.13■■□□□ 1.13
MSH6P52701 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH6P52701 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH6P52701 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH6P52701 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH6P52701 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH6P52701 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
MSH6P52701 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH6P52701 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH6P52701 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH6P52701 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH6P52701 AGER-206ENST00000375070 1463 ntTSL 5 BASIC22.13■■□□□ 1.13
MSH6P52701 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
MSH6P52701 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH6P52701 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC22.13■■□□□ 1.13
MSH6P52701 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC22.13■■□□□ 1.13
MSH6P52701 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH6P52701 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC22.13■■□□□ 1.13
MSH6P52701 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC22.13■■□□□ 1.13
MSH6P52701 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC22.13■■□□□ 1.13
MSH6P52701 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
MSH6P52701 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
MSH6P52701 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 AC091046.1-201ENST00000331871 207 ntBASIC22.12■■□□□ 1.13
MSH6P52701 ACKR1-201ENST00000368121 1240 ntBASIC22.12■■□□□ 1.13
MSH6P52701 IGF1-203ENST00000392904 761 ntTSL 5 BASIC22.12■■□□□ 1.13
MSH6P52701 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC22.12■■□□□ 1.13
MSH6P52701 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC22.12■■□□□ 1.13
MSH6P52701 IMP3P2-201ENST00000489760 475 ntBASIC22.12■■□□□ 1.13
MSH6P52701 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC22.12■■□□□ 1.13
MSH6P52701 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC22.12■■□□□ 1.13
MSH6P52701 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
MSH6P52701 AC091812.3-201ENST00000621362 345 ntBASIC22.12■■□□□ 1.13
MSH6P52701 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
MSH6P52701 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
MSH6P52701 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
MSH6P52701 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
MSH6P52701 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
MSH6P52701 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 PTPA-217ENST00000434095 870 ntTSL 2 BASIC22.12■■□□□ 1.13
MSH6P52701 HOMER2P2-201ENST00000451621 847 ntBASIC22.12■■□□□ 1.13
MSH6P52701 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC22.12■■□□□ 1.13
MSH6P52701 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 SLED1-202ENST00000512051 380 ntBASIC22.12■■□□□ 1.13
MSH6P52701 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC22.12■■□□□ 1.13
MSH6P52701 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
MSH6P52701 NDUFV2P1-201ENST00000596415 907 ntBASIC22.12■■□□□ 1.13
MSH6P52701 AL096828.3-201ENST00000615354 462 ntBASIC22.12■■□□□ 1.13
MSH6P52701 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
MSH6P52701 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC22.12■■□□□ 1.13
MSH6P52701 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC22.11■■□□□ 1.13
MSH6P52701 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 REXO1L8P-201ENST00000604378 1897 ntBASIC22.11■■□□□ 1.13
MSH6P52701 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC22.11■■□□□ 1.13
MSH6P52701 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC22.11■■□□□ 1.13
MSH6P52701 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
MSH6P52701 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
MSH6P52701 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC22.11■■□□□ 1.13
MSH6P52701 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
MSH6P52701 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC22.11■■□□□ 1.13
MSH6P52701 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC22.11■■□□□ 1.13
MSH6P52701 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC22.11■■□□□ 1.13
MSH6P52701 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC22.11■■□□□ 1.13
MSH6P52701 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC22.11■■□□□ 1.13
MSH6P52701 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms