Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RFX3P48380 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX3P48380 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.33■□□□□ 0.04
RFX3P48380 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX3P48380 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.33■□□□□ 0.04
RFX3P48380 PDPK2P-202ENST00000562415 1191 ntBASIC15.33■□□□□ 0.04
RFX3P48380 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX3P48380 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 AL009183.1-201ENST00000603760 355 ntBASIC15.33■□□□□ 0.04
RFX3P48380 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.33■□□□□ 0.04
RFX3P48380 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.33■□□□□ 0.04
RFX3P48380 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RFX3P48380 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX3P48380 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
RFX3P48380 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.33■□□□□ 0.04
RFX3P48380 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RFX3P48380 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX3P48380 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX3P48380 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.32■□□□□ 0.04
RFX3P48380 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX3P48380 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.32■□□□□ 0.04
RFX3P48380 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX3P48380 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.32■□□□□ 0.04
RFX3P48380 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RFX3P48380 PMS2P4-201ENST00000412466 1052 ntBASIC15.32■□□□□ 0.04
RFX3P48380 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX3P48380 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.32■□□□□ 0.04
RFX3P48380 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.32■□□□□ 0.04
RFX3P48380 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.32■□□□□ 0.04
RFX3P48380 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX3P48380 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.32■□□□□ 0.04
RFX3P48380 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.32■□□□□ 0.04
RFX3P48380 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
RFX3P48380 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RFX3P48380 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RFX3P48380 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 AP003680.1-201ENST00000598970 3660 ntBASIC15.31■□□□□ 0.04
RFX3P48380 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.31■□□□□ 0.04
RFX3P48380 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
RFX3P48380 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.31■□□□□ 0.04
RFX3P48380 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.31■□□□□ 0.04
RFX3P48380 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.31■□□□□ 0.04
RFX3P48380 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.31■□□□□ 0.04
RFX3P48380 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.31■□□□□ 0.04
RFX3P48380 AC040169.1-201ENST00000565382 521 ntBASIC15.31■□□□□ 0.04
RFX3P48380 AC020765.3-201ENST00000613051 740 ntBASIC15.31■□□□□ 0.04
RFX3P48380 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.31■□□□□ 0.04
RFX3P48380 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFX3P48380 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.31■□□□□ 0.04
RFX3P48380 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
RFX3P48380 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms